Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00045 ATGACTTGTGGGGCTCGATTGCTTGTGTTGGATTTTGTGCTGGCTTTTATGTGGGTATGGTCGGGGACTTTGATTAAGATCTTTGTTTTTGGGACATTGGGATTTGGAAATGATCCGGTCGGAGAGATTGTGAAGGCTTCCTTTTCGATTCTCAACATGTTTGTGTTTGCGTTTTTGTCGAAAATTTGGAATGGGGCTTCTTATAATCCTCTTAACATCTTGTCTGATGCTTTTTCTGGGGATTCCAGTAGCTTTCTCTTCGTTGCAGGTGCCAGAATCCCTGCTCAGGTACTTGGAGCCATTAGTGGTGTTAGGCTGATTATCCAGACAATCCCTGAAGCAGGACGAGGGCCTCATTTGAACGTTGGCATCCATCACGGTGCTCTCACAGAAGGATTGTTAACATACGGCATTGTCCTAATCTCGCTTGGACTGTCCACGACACTCCCAGGAAATTTCTTCATGAAGACATGGATCTCCAGCTGCTCCAAGTTAACTCTTCAGATTCTTGGTTCTGACTTAACCGGTGGTTGCATGAACCCTGCCTCTGTAATAGGATGGGCGTATGCTCGTGGGGAACATATAACCAAAGAACACCTTTTTGTATACTGGATTGCTCCAATTCAAGGAACCATACTTGCCGTATGGACGTTTAAGTTACTATTTCGACAACCGAACGAGGAGAATGTAAACACGAAGAAGAAATCTGAATGA 714 44.54 MTCGARLLVLDFVLAFMWVWSGTLIKIFVFGTLGFGNDPVGEIVKASFSILNMFVFAFLSKIWNGASYNPLNILSDAFSGDSSSFLFVAGARIPAQVLGAISGVRLIIQTIPEAGRGPHLNVGIHHGALTEGLLTYGIVLISLGLSTTLPGNFFMKTWISSCSKLTLQILGSDLTGGCMNPASVIGWAYARGEHITKEHLFVYWIAPIQGTILAVWTFKLLFRQPNEENVNTKKKSE 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 256302 257914 - CmaCh06G000450.1 Cma06g00045 295599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00045 237 Pfam Major intrinsic protein 93 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00045 237 PANTHER AQUAPORIN SIP2-1-RELATED 5 237 IPR044226 GO:0015267
Cma06g00045 237 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00045 237 PRINTS Major intrinsic protein family signature 88 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00045 237 PRINTS Major intrinsic protein family signature 130 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00045 237 PRINTS Major intrinsic protein family signature 161 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00045 237 PRINTS Major intrinsic protein family signature 201 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00045 237 SUPERFAMILY Aquaporin-like 6 235 IPR023271 -
Cma06g00045 237 Gene3D Glycerol uptake facilitator protein. 5 235 IPR023271 -
Cma06g00045 237 PANTHER AQUAPORIN SIP2-1-RELATED 5 237 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00045 Cma07g01173 CCT
Cma03g00249 Cma06g00045 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00249 Cma-Chr3:3548976 Cma06g00045 Cma-Chr6:256302 5.29E-37 dispersed
Cma06g00045 Cma-Chr6:256302 Cma07g01173 Cma-Chr7:6432221 4.94E-28 dispersed
Cma14g00483 Cma-Chr14:2359406 Cma06g00045 Cma-Chr6:256302 6.81E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00045 K09875 - csv:101214379 374.4