Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00055 ATGGAGATCTTACAGGCTCTCGATGCTCAGGTTCTCACTGGCTTAGCCGCCGCCCTGGTTGCCATTGTTGCTGGTGCCTTTTTCCTTGTCTCCTCCAGAAAACCAGCATCCAGAGCCTGCTTGGATCCTGATAACTTTAAGGAGTTTAAACTTGTTAAGCGCACGAAGCTGAGCCATAATGTGGCAAAGTTCATTTTTATACTTCCCAAGACCGATTCAATTCTTGGTCTTCCTATTGGACAGCATCTAAGTTGCAGGGGAAAGGATAGCCAAGGTGAAGAGGTTATTAAATCTTACACCCCAGTTACCTTGGACTCTGATGTTGGATATTTTGAGCTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCGCATCATTTTCGAGAAATGCGTATGGGGGACTTTCTTGCTGTGAAGGGACCAAAGGGAAGTTTCAAGTATCAACCTGGTAAAGTTAGAGCATTTGGGATGCTCGCTGGAGGCTCTGGCATTACACCCATGTATCAAGTTGCTCGGTCTATATTAGAAAACCCGAACGACAAGACAAAGATTCACCTTATTTATGCCAATGTTACACTTGAAGATATTCTTTTGAAGGAGGAATTGGATCTTCTTGCCAAGAGATACCCTGATCGCTTCAAGATCTACTATGTGTTAAACCAGCCTCCTAAAGTTTGGGATGGCGGCGTCGGCTTTGTGTCGAAAGAAATGATTCGAGCGCATTGCCCTGCACCGGCCTCTTACATTCAGATTTTGCGGTGTGGTCCACCGCCGATGAACAAGGCCATGGCTGCCCACCTTGATGCTCTTGGATATACACCTGAAATGCAGTTCCAATTCTAG 843 45.67 MEILQALDAQVLTGLAAALVAIVAGAFFLVSSRKPASRACLDPDNFKEFKLVKRTKLSHNVAKFIFILPKTDSILGLPIGQHLSCRGKDSQGEEVIKSYTPVTLDSDVGYFELVIKMYPQGRMSHHFREMRMGDFLAVKGPKGSFKYQPGKVRAFGMLAGGSGITPMYQVARSILENPNDKTKIHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPKVWDGGVGFVSKEMIRAHCPAPASYIQILRCGPPPMNKAMAAHLDALGYTPEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 301096 305913 + CmaCh06G000550.1 Cma06g00055 295609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00055 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491
Cma06g00055 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 280 - -
Cma06g00055 280 CDD cyt_b5_reduct_like 49 280 - -
Cma06g00055 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491
Cma06g00055 280 Gene3D Translation factors 38 137 - -
Cma06g00055 280 PRINTS Cytochrome B5 reductase signature 75 86 - -
Cma06g00055 280 PRINTS Cytochrome B5 reductase signature 97 104 - -
Cma06g00055 280 PRINTS Cytochrome B5 reductase signature 133 147 - -
Cma06g00055 280 PRINTS Cytochrome B5 reductase signature 156 175 - -
Cma06g00055 280 PRINTS Cytochrome B5 reductase signature 194 205 - -
Cma06g00055 280 PRINTS Cytochrome B5 reductase signature 250 258 - -
Cma06g00055 280 Gene3D - 138 280 IPR039261 -
Cma06g00055 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
Cma06g00055 280 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 276 IPR039261 -
Cma06g00055 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 175 IPR001709 GO:0016491
Cma06g00055 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 205 IPR001709 GO:0016491
Cma06g00055 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 250 258 IPR001709 GO:0016491
Cma06g00055 280 SUPERFAMILY Riboflavin synthase domain-like 41 149 IPR017938 -
Cma06g00055 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 280 IPR001834 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00055 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101212931 498.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00173 Cma-Chr3:2315618 Cma06g00055 Cma-Chr6:301096 1.01E-165 dispersed
Cma06g00055 Cma-Chr6:301096 Cma20g00014 Cma-Chr20:36360 3.64E-145 dispersed
Cma06g00055 Cma-Chr6:301096 Cma07g01119 Cma-Chr7:6087617 1.09E-172 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-58 222.2
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G53560 76.1 2.4e-57 218.8
Cma14g01890 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.8e-52 202.6
Cma06g01244 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cma17g00107 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-47 186.0
Cma02g01681 . 63 188 NADPH P450 reductases AT5G53560 63.5 2.3e-44 175.6
Cma19g00162 . 80 207 NADPH P450 reductases AT5G53560 64.1 3.1e-44 175.3
Cma06g01244 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma14g01890 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma17g00107 . 1 133 NADPH P450 reductases AT5G48810 61.5 1.0e-45 180.3
Cma19g00162 . 78 208 NADPH P450 reductases AT5G48810 63.2 2.9e-45 178.7
Cma02g01681 . 63 189 NADPH P450 reductases AT5G48810 62.8 1.4e-44 176.4
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G48810 57.4 5.5e-44 174.5
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.6e-43 172.9
Cma14g01890 . 22 133 NADPH P450 reductases AT2G32720 84.8 9.8e-51 196.8
Cma06g01244 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.9e-50 194.5
Cma17g00107 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.9e-46 182.6
Cma02g01681 . 78 189 NADPH P450 reductases AT2G32720 71.4 1.9e-41 166.0
Cma19g00162 . 97 208 NADPH P450 reductases AT2G32720 71.4 9.2e-41 163.7
Cma02g01139 CST 22 133 NADPH P450 reductases AT2G32720 66.1 6.0e-40 161.0
Cma15g01010 CST 22 133 NADPH P450 reductases AT2G32720 64.3 1.3e-39 159.8
Cma05g00451 . 1 130 NADPH P450 reductases AT1G26340 56.7 1.9e-38 156.0
Cma07g01119 CST 2 281 NADPH P450 reductases AT5G17770 80.7 3.7e-132 468.4
Cma03g00173 CST 2 281 NADPH P450 reductases AT5G17770 81.1 5.8e-130 461.1
Cma06g00055 . 2 280 NADPH P450 reductases AT5G17770 78.2 3.9e-126 448.4
Cma20g00014 . 1 282 NADPH P450 reductases AT5G17770 68.2 6.5e-113 404.4
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-58 222.2
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G53560 76.1 2.4e-57 218.8
Cma14g01890 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.8e-52 202.6
Cma06g01244 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cma17g00107 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-47 186.0
Cma02g01681 . 63 188 NADPH P450 reductases AT5G53560 63.5 2.3e-44 175.6
Cma19g00162 . 80 207 NADPH P450 reductases AT5G53560 64.1 3.1e-44 175.3
Cma06g01244 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma14g01890 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma17g00107 . 1 133 NADPH P450 reductases AT5G48810 61.5 1.0e-45 180.3
Cma19g00162 . 78 208 NADPH P450 reductases AT5G48810 63.2 2.9e-45 178.7
Cma02g01681 . 63 189 NADPH P450 reductases AT5G48810 62.8 1.4e-44 176.4
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G48810 57.4 5.5e-44 174.5
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.6e-43 172.9
Cma14g01890 . 22 133 NADPH P450 reductases AT2G32720 84.8 9.8e-51 196.8
Cma06g01244 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.9e-50 194.5
Cma17g00107 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.9e-46 182.6
Cma02g01681 . 78 189 NADPH P450 reductases AT2G32720 71.4 1.9e-41 166.0
Cma19g00162 . 97 208 NADPH P450 reductases AT2G32720 71.4 9.2e-41 163.7
Cma02g01139 CST 22 133 NADPH P450 reductases AT2G32720 66.1 6.0e-40 161.0
Cma15g01010 CST 22 133 NADPH P450 reductases AT2G32720 64.3 1.3e-39 159.8
Cma05g00451 . 1 130 NADPH P450 reductases AT1G26340 56.7 1.9e-38 156.0
Cma07g01119 CST 2 281 NADPH P450 reductases AT5G17770 80.7 3.7e-132 468.4
Cma03g00173 CST 2 281 NADPH P450 reductases AT5G17770 81.1 5.8e-130 461.1
Cma06g00055 . 2 280 NADPH P450 reductases AT5G17770 78.2 3.9e-126 448.4
Cma20g00014 . 1 282 NADPH P450 reductases AT5G17770 68.2 6.5e-113 404.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00055 Cma_Chr06 FPKM 73.904137 82.671799 8.509111 8.554389 8.946169 10.857256 12.225957 5.799086 4.652013 4.409372