Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00055 ATGGAGATCTTACAGGCTCTCGATGCTCAGGTTCTCACTGGCTTAGCCGCCGCCCTGGTTGCCATTGTTGCTGGTGCCTTTTTCCTTGTCTCCTCCAGAAAACCAGCATCCAGAGCCTGCTTGGATCCTGATAACTTTAAGGAGTTTAAACTTGTTAAGCGCACGAAGCTGAGCCATAATGTGGCAAAGTTCATTTTTATACTTCCCAAGACCGATTCAATTCTTGGTCTTCCTATTGGACAGCATCTAAGTTGCAGGGGAAAGGATAGCCAAGGTGAAGAGGTTATTAAATCTTACACCCCAGTTACCTTGGACTCTGATGTTGGATATTTTGAGCTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCGCATCATTTTCGAGAAATGCGTATGGGGGACTTTCTTGCTGTGAAGGGACCAAAGGGAAGTTTCAAGTATCAACCTGGTAAAGTTAGAGCATTTGGGATGCTCGCTGGAGGCTCTGGCATTACACCCATGTATCAAGTTGCTCGGTCTATATTAGAAAACCCGAACGACAAGACAAAGATTCACCTTATTTATGCCAATGTTACACTTGAAGATATTCTTTTGAAGGAGGAATTGGATCTTCTTGCCAAGAGATACCCTGATCGCTTCAAGATCTACTATGTGTTAAACCAGCCTCCTAAAGTTTGGGATGGCGGCGTCGGCTTTGTGTCGAAAGAAATGATTCGAGCGCATTGCCCTGCACCGGCCTCTTACATTCAGATTTTGCGGTGTGGTCCACCGCCGATGAACAAGGCCATGGCTGCCCACCTTGATGCTCTTGGATATACACCTGAAATGCAGTTCCAATTCTAG 843 45.67 MEILQALDAQVLTGLAAALVAIVAGAFFLVSSRKPASRACLDPDNFKEFKLVKRTKLSHNVAKFIFILPKTDSILGLPIGQHLSCRGKDSQGEEVIKSYTPVTLDSDVGYFELVIKMYPQGRMSHHFREMRMGDFLAVKGPKGSFKYQPGKVRAFGMLAGGSGITPMYQVARSILENPNDKTKIHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPKVWDGGVGFVSKEMIRAHCPAPASYIQILRCGPPPMNKAMAAHLDALGYTPEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 301096 305913 + CmaCh06G000550.1 Cma06g00055 295609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00055 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491
Cma06g00055 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 280 - -
Cma06g00055 280 CDD cyt_b5_reduct_like 49 280 - -
Cma06g00055 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491
Cma06g00055 280 Gene3D Translation factors 38 137 - -
Cma06g00055 280 PRINTS Cytochrome B5 reductase signature 75 86 - -
Cma06g00055 280 PRINTS Cytochrome B5 reductase signature 97 104 - -
Cma06g00055 280 PRINTS Cytochrome B5 reductase signature 133 147 - -
Cma06g00055 280 PRINTS Cytochrome B5 reductase signature 156 175 - -
Cma06g00055 280 PRINTS Cytochrome B5 reductase signature 194 205 - -
Cma06g00055 280 PRINTS Cytochrome B5 reductase signature 250 258 - -
Cma06g00055 280 Gene3D - 138 280 IPR039261 -
Cma06g00055 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
Cma06g00055 280 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 276 IPR039261 -
Cma06g00055 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 175 IPR001709 GO:0016491
Cma06g00055 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 205 IPR001709 GO:0016491
Cma06g00055 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 250 258 IPR001709 GO:0016491
Cma06g00055 280 SUPERFAMILY Riboflavin synthase domain-like 41 149 IPR017938 -
Cma06g00055 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 280 IPR001834 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00173 Cma-Chr3:2315618 Cma06g00055 Cma-Chr6:301096 1.01E-165 dispersed
Cma06g00055 Cma-Chr6:301096 Cma20g00014 Cma-Chr20:36360 3.64E-145 dispersed
Cma06g00055 Cma-Chr6:301096 Cma07g01119 Cma-Chr7:6087617 1.09E-172 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00055 K00326 - csv:101212931 498.819