Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00070 ATGGAAAATCACGGCGATGACCCAAACAGTCCAAATCTCAGCTCCGACAGGGCGGAGCCAGTGAGATCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTTTGGAGTCCATTTTCAACAGTGGAATGGTTAATCCACCCAAGGATGAGACTGTTAGAATTAGAAAGCTGCTTGAGAAATTTGGCTCTGTCGGAGATGCCAATGTTTTCTACTGGTTTCAAAACCGCCGCTCTCGGTCTCGCCGCCGCCAACGCCAGCTGCAGGCGGCTGCAACCCACCAAGGTGGCAGTGCAATTCATTATGACAGTGGTTGTGGCGGTGGCAGTGTCATGAATTTTGCTCCTTCCTCTTCTTACCTTGGAGAAGGAGGGTCCTCCTCCTCCTCCTCTTCCGCCTCCGCCTCCGGCGGCGGCGGCGGTTTTTCGATGACCGATCACATGGGTATCTCTGAAATTGATCAGCCGATGGTTGTAACCCCCTCGTTTTGCCCTTCAGCAACCTCGAATTTAGAGTTCCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGAGCGGTGGACATGAAGGCAATGTTTGGGGATGACACAGTGTTGGTTCACTCCTCAGGACTCCCAGTTCTTACCAATGAATTTGGAATATCACTGCACAGTCTGCAGCATGGTGAAACCTACTTTCTGGTTTCAAGGCCGACATGA 717 50.63 MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQGGSAIHYDSGCGGGSVMNFAPSSSYLGEGGSSSSSSSASASGGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYFLVSRPT 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 396091 397923 - CmaCh06G000700.1 Cma06g00070 295624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00070 238 MobiDBLite consensus disorder prediction 1 19 - -
Cma06g00070 238 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 237 IPR044558 GO:0003700|GO:0048830
Cma06g00070 238 SUPERFAMILY Homeodomain-like 20 90 IPR009057 -
Cma06g00070 238 MobiDBLite consensus disorder prediction 1 25 - -
Cma06g00070 238 Pfam Homeodomain 22 82 IPR001356 GO:0003677
Cma06g00070 238 Gene3D - 22 89 - -
Cma06g00070 238 SMART HOX_1 20 87 IPR001356 GO:0003677
Cma06g00070 238 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677
Cma06g00070 238 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00070 Cma-Chr6:396091 Cma07g00209 Cma-Chr7:966712 7.00E-17 dispersed
Cma14g00454 Cma-Chr14:2171571 Cma06g00070 Cma-Chr6:396091 5.33E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35132 PF00046 Homeodomain 5.80E-13 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00070 - - cmos:111450454 413.305