Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00070 ATGGAAAATCACGGCGATGACCCAAACAGTCCAAATCTCAGCTCCGACAGGGCGGAGCCAGTGAGATCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTTTGGAGTCCATTTTCAACAGTGGAATGGTTAATCCACCCAAGGATGAGACTGTTAGAATTAGAAAGCTGCTTGAGAAATTTGGCTCTGTCGGAGATGCCAATGTTTTCTACTGGTTTCAAAACCGCCGCTCTCGGTCTCGCCGCCGCCAACGCCAGCTGCAGGCGGCTGCAACCCACCAAGGTGGCAGTGCAATTCATTATGACAGTGGTTGTGGCGGTGGCAGTGTCATGAATTTTGCTCCTTCCTCTTCTTACCTTGGAGAAGGAGGGTCCTCCTCCTCCTCCTCTTCCGCCTCCGCCTCCGGCGGCGGCGGCGGTTTTTCGATGACCGATCACATGGGTATCTCTGAAATTGATCAGCCGATGGTTGTAACCCCCTCGTTTTGCCCTTCAGCAACCTCGAATTTAGAGTTCCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGAGCGGTGGACATGAAGGCAATGTTTGGGGATGACACAGTGTTGGTTCACTCCTCAGGACTCCCAGTTCTTACCAATGAATTTGGAATATCACTGCACAGTCTGCAGCATGGTGAAACCTACTTTCTGGTTTCAAGGCCGACATGA 717 50.63 MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQGGSAIHYDSGCGGGSVMNFAPSSSYLGEGGSSSSSSSASASGGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYFLVSRPT 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 396091 397923 - CmaCh06G000700.1 Cma06g00070 295624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00070 238 MobiDBLite consensus disorder prediction 1 19 - -
Cma06g00070 238 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 237 IPR044558 GO:0003700|GO:0048830
Cma06g00070 238 SUPERFAMILY Homeodomain-like 20 90 IPR009057 -
Cma06g00070 238 MobiDBLite consensus disorder prediction 1 25 - -
Cma06g00070 238 Pfam Homeodomain 22 82 IPR001356 GO:0003677
Cma06g00070 238 Gene3D - 22 89 - -
Cma06g00070 238 SMART HOX_1 20 87 IPR001356 GO:0003677
Cma06g00070 238 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677
Cma06g00070 238 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00070 - - - cmos:111450454 413.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00070 Cma-Chr6:396091 Cma07g00209 Cma-Chr7:966712 7.00E-17 dispersed
Cma14g00454 Cma-Chr14:2171571 Cma06g00070 Cma-Chr6:396091 5.33E-106 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005221 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35132 PF00046 Homeodomain 5.80E-13 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00070 Cma_Chr06 FPKM 0.0 0.0 0.397402 0.282026 0.0 0.0 0.0 0.0 0.0 0.0