Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00070 | ATGGAAAATCACGGCGATGACCCAAACAGTCCAAATCTCAGCTCCGACAGGGCGGAGCCAGTGAGATCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTTTGGAGTCCATTTTCAACAGTGGAATGGTTAATCCACCCAAGGATGAGACTGTTAGAATTAGAAAGCTGCTTGAGAAATTTGGCTCTGTCGGAGATGCCAATGTTTTCTACTGGTTTCAAAACCGCCGCTCTCGGTCTCGCCGCCGCCAACGCCAGCTGCAGGCGGCTGCAACCCACCAAGGTGGCAGTGCAATTCATTATGACAGTGGTTGTGGCGGTGGCAGTGTCATGAATTTTGCTCCTTCCTCTTCTTACCTTGGAGAAGGAGGGTCCTCCTCCTCCTCCTCTTCCGCCTCCGCCTCCGGCGGCGGCGGCGGTTTTTCGATGACCGATCACATGGGTATCTCTGAAATTGATCAGCCGATGGTTGTAACCCCCTCGTTTTGCCCTTCAGCAACCTCGAATTTAGAGTTCCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGAGCGGTGGACATGAAGGCAATGTTTGGGGATGACACAGTGTTGGTTCACTCCTCAGGACTCCCAGTTCTTACCAATGAATTTGGAATATCACTGCACAGTCTGCAGCATGGTGAAACCTACTTTCTGGTTTCAAGGCCGACATGA | 717 | 50.63 | MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQGGSAIHYDSGCGGGSVMNFAPSSSYLGEGGSSSSSSSASASGGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYFLVSRPT | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 396091 | 397923 | - | CmaCh06G000700.1 | Cma06g00070 | 295624 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00070 | 238 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cma06g00070 | 238 | PANTHER | WUSCHEL-RELATED HOMEOBOX 11 | 2 | 237 | IPR044558 | GO:0003700|GO:0048830 | |
Cma06g00070 | 238 | SUPERFAMILY | Homeodomain-like | 20 | 90 | IPR009057 | - | |
Cma06g00070 | 238 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cma06g00070 | 238 | Pfam | Homeodomain | 22 | 82 | IPR001356 | GO:0003677 | |
Cma06g00070 | 238 | Gene3D | - | 22 | 89 | - | - | |
Cma06g00070 | 238 | SMART | HOX_1 | 20 | 87 | IPR001356 | GO:0003677 | |
Cma06g00070 | 238 | ProSiteProfiles | 'Homeobox' domain profile. | 18 | 83 | IPR001356 | GO:0003677 | |
Cma06g00070 | 238 | PANTHER | WUSCHEL-RELATED HOMEOBOX 11 | 2 | 237 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00070 | Cma-Chr6:396091 | Cma07g00209 | Cma-Chr7:966712 | 7.00E-17 | dispersed | |
Cma14g00454 | Cma-Chr14:2171571 | Cma06g00070 | Cma-Chr6:396091 | 5.33E-106 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35132 | PF00046 | Homeodomain | 5.80E-13 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00070 | - | - | cmos:111450454 | 413.305 |