Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00077 | ATGGATAGCGGCAGCAGAGACAAAAAATCCCATTCTCCACTTCTTAAGCCATGGAAGAAAGGCCCTTCCCGAGGCAAAGGCGGCCCTCTCAACGCCTCCTGCGAGTACCGCGGCGTCCGGCAGCGGACTTGGGGCAAGTGGGTGGCTGAGATCCGCGAGCCCAAGAAGCGCACCAGGCTCTGGCTGGGCTCCTTCGCCACTGCTGAAGAGGCCGCCATGGCTTATGATCAAGCTGCCACTAGACTCTATGGCCCTGATGCTTATCTCAATCTTCCCCACTTGCAGCCAAATTCTAGTGCTGCTAAATCTAATATCTTCAAATGGGTTCCTTCTAAAAACTTCATTTCTATGTTTCCTCATCATCGCCCTGCCGGTTTCATGCTTAATCTCAATGCTCAGCCTAGTGTTCATCTCATTCATCAGAGGCTTCAGCAGCTTCAAACCTCTCGTGGCTTTCTCTCTCCTTCCAAGAAAGTTGAAGACAAGAGAGAAACAGAGGGAGAGAAGGACGATGAAGCACCGGTGGAAGACAAGGAGGTGACGACGACGACGACAGCGACAATAAGAGCCGTGGAAGAGAAACCACAAATTGATCTAAACGAGTTTCTACAACAACTTGGGATTATGAAAGGAGAAGAGGAGAAAGTGATTGAATCATCAGAAGGAGAGGAAGGGAATGGAGGCTGTTTTTTGGGATCAGAATCATCTAATAATAATTTGAAAGATCATTATAGCGATGAACTTGAAGTACTTAGTGACAAAAGCTTTAACTGGGATTCCATAATGGACGTGCATGCCAATATTGAAGATCTTCATCACCACCATCATCATCAAATTGGAAACTTTGAAGTTTATGATTATGTTCATAACTACGAAGATGATCTAATAACCATCTTCGCGCCCGCCGCCGCCGCCATCGATAAGAGACATCCTTTGTTGCAACCCGCCGTCGTCGCCACTAAGCCCTCTCCGTCGTCTAGTCGCCATCGTAAAAGCTTCACTCACGCCGCCGCTATAGGCTGA | 1023 | 48.09 | MDSGSRDKKSHSPLLKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDQAATRLYGPDAYLNLPHLQPNSSAAKSNIFKWVPSKNFISMFPHHRPAGFMLNLNAQPSVHLIHQRLQQLQTSRGFLSPSKKVEDKRETEGEKDDEAPVEDKEVTTTTTATIRAVEEKPQIDLNEFLQQLGIMKGEEEKVIESSEGEEGNGGCFLGSESSNNNLKDHYSDELEVLSDKSFNWDSIMDVHANIEDLHHHHHHQIGNFEVYDYVHNYEDDLITIFAPAAAAIDKRHPLLQPAVVATKPSPSSSRHRKSFTHAAAIG | 340 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 423984 | 426110 | + | CmaCh06G000770.1 | Cma06g00077 | 295631 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00077 | 340 | MobiDBLite | consensus disorder prediction | 150 | 182 | - | - | |
Cma06g00077 | 340 | MobiDBLite | consensus disorder prediction | 155 | 178 | - | - | |
Cma06g00077 | 340 | Pfam | AP2 domain | 34 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00077 | 340 | ProSiteProfiles | AP2/ERF domain profile. | 35 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00077 | 340 | MobiDBLite | consensus disorder prediction | 319 | 340 | - | - | |
Cma06g00077 | 340 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cma06g00077 | 340 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F | 12 | 297 | - | - | |
Cma06g00077 | 340 | PRINTS | Ethylene responsive element binding protein signature | 58 | 74 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00077 | 340 | PRINTS | Ethylene responsive element binding protein signature | 36 | 47 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00077 | 340 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 12 | 297 | - | - | |
Cma06g00077 | 340 | CDD | AP2 | 34 | 94 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00077 | 340 | Gene3D | AP2/ERF domain | 35 | 93 | IPR036955 | GO:0003700|GO:0006355 | |
Cma06g00077 | 340 | SMART | rav1_2 | 35 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00077 | 340 | SUPERFAMILY | DNA-binding domain | 35 | 93 | IPR016177 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00274 | Cma-Chr5:1160764 | Cma06g00077 | Cma-Chr6:423984 | 6.49E-37 | dispersed | |
Cma06g00077 | Cma-Chr6:423984 | Cma12g00437 | Cma-Chr12:2284706 | 1.68E-33 | dispersed | |
Cma14g00446 | Cma-Chr14:2132048 | Cma06g00077 | Cma-Chr6:423984 | 3.16E-124 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35134 | PF00847 | AP2 | 3.20E-14 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00077 | - | - | csv:101206353 | 333.954 |