Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00077 ATGGATAGCGGCAGCAGAGACAAAAAATCCCATTCTCCACTTCTTAAGCCATGGAAGAAAGGCCCTTCCCGAGGCAAAGGCGGCCCTCTCAACGCCTCCTGCGAGTACCGCGGCGTCCGGCAGCGGACTTGGGGCAAGTGGGTGGCTGAGATCCGCGAGCCCAAGAAGCGCACCAGGCTCTGGCTGGGCTCCTTCGCCACTGCTGAAGAGGCCGCCATGGCTTATGATCAAGCTGCCACTAGACTCTATGGCCCTGATGCTTATCTCAATCTTCCCCACTTGCAGCCAAATTCTAGTGCTGCTAAATCTAATATCTTCAAATGGGTTCCTTCTAAAAACTTCATTTCTATGTTTCCTCATCATCGCCCTGCCGGTTTCATGCTTAATCTCAATGCTCAGCCTAGTGTTCATCTCATTCATCAGAGGCTTCAGCAGCTTCAAACCTCTCGTGGCTTTCTCTCTCCTTCCAAGAAAGTTGAAGACAAGAGAGAAACAGAGGGAGAGAAGGACGATGAAGCACCGGTGGAAGACAAGGAGGTGACGACGACGACGACAGCGACAATAAGAGCCGTGGAAGAGAAACCACAAATTGATCTAAACGAGTTTCTACAACAACTTGGGATTATGAAAGGAGAAGAGGAGAAAGTGATTGAATCATCAGAAGGAGAGGAAGGGAATGGAGGCTGTTTTTTGGGATCAGAATCATCTAATAATAATTTGAAAGATCATTATAGCGATGAACTTGAAGTACTTAGTGACAAAAGCTTTAACTGGGATTCCATAATGGACGTGCATGCCAATATTGAAGATCTTCATCACCACCATCATCATCAAATTGGAAACTTTGAAGTTTATGATTATGTTCATAACTACGAAGATGATCTAATAACCATCTTCGCGCCCGCCGCCGCCGCCATCGATAAGAGACATCCTTTGTTGCAACCCGCCGTCGTCGCCACTAAGCCCTCTCCGTCGTCTAGTCGCCATCGTAAAAGCTTCACTCACGCCGCCGCTATAGGCTGA 1023 48.09 MDSGSRDKKSHSPLLKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDQAATRLYGPDAYLNLPHLQPNSSAAKSNIFKWVPSKNFISMFPHHRPAGFMLNLNAQPSVHLIHQRLQQLQTSRGFLSPSKKVEDKRETEGEKDDEAPVEDKEVTTTTTATIRAVEEKPQIDLNEFLQQLGIMKGEEEKVIESSEGEEGNGGCFLGSESSNNNLKDHYSDELEVLSDKSFNWDSIMDVHANIEDLHHHHHHQIGNFEVYDYVHNYEDDLITIFAPAAAAIDKRHPLLQPAVVATKPSPSSSRHRKSFTHAAAIG 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 423984 426110 + CmaCh06G000770.1 Cma06g00077 295631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00077 340 MobiDBLite consensus disorder prediction 150 182 - -
Cma06g00077 340 MobiDBLite consensus disorder prediction 155 178 - -
Cma06g00077 340 Pfam AP2 domain 34 84 IPR001471 GO:0003700|GO:0006355
Cma06g00077 340 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Cma06g00077 340 MobiDBLite consensus disorder prediction 319 340 - -
Cma06g00077 340 MobiDBLite consensus disorder prediction 1 32 - -
Cma06g00077 340 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 12 297 - -
Cma06g00077 340 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Cma06g00077 340 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Cma06g00077 340 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 12 297 - -
Cma06g00077 340 CDD AP2 34 94 IPR001471 GO:0003700|GO:0006355
Cma06g00077 340 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Cma06g00077 340 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Cma06g00077 340 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00274 Cma-Chr5:1160764 Cma06g00077 Cma-Chr6:423984 6.49E-37 dispersed
Cma06g00077 Cma-Chr6:423984 Cma12g00437 Cma-Chr12:2284706 1.68E-33 dispersed
Cma14g00446 Cma-Chr14:2132048 Cma06g00077 Cma-Chr6:423984 3.16E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35134 PF00847 AP2 3.20E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00077 - - csv:101206353 333.954