Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00080 ATGGATGATCCTTCCACTAATTTCTTCACAGATCTCTTCAAATTCAACTATCCCACTAATTTCCACCACCACCACCACAACCCTCCTTCTTCAAATCCTCCTCCCAATTTCTTCCACGCGCCGCCCTCCTCTCCTCCACTCCGGCAGGCCCTCCCCCTCCTCCGCCTCAGCCCCACAAGGTCATCACAAGACCACCACCTCTCTTTTACTTCCTCCTCCGCCATGGAAATTGACAACAACAACAACAACGATAACGAGGATGTTTCGGTGACGGTTGCGCTTCACATAGGGCTTCCAAGCTCTAATGCCTCAGAAATGGCAACCCTTTTGGTGTCTGATAATAATAATCAAAATGAGGAAGAAGATCAATTAGAAGAAGAATTAGAAGAAGAAGAAGATGAAGATGAAGAACAGCAACAAGCGGGTATCACAATTTCTGGATTCTCTTTGAGTAGCAGACTCAATAAAGGACAGTATTGGATCCCTACTCCTTCTCAAATCCTCATTGGTCCTACTCAATTTTCTTGTCCTGTTTGTTTCAAAACCTTCAATCGATACAACAACATGCAGATGCACATGTGGGGGCATGGTTCACAATACAGGCGAGGCCCGGAGTCCTTGAGAGGCACACAGCCAACGGGCATGCTCAGGCTGCCGTGCTACTGCTGCTCGCCGGGCTGCCGCAACAACATCGACCATCCGAGAGCGAAGCCATTGAAGGACTTCAGAACCCTTCAAACTCATTACAAACGCAAGCATGGAATCAAGCCATTCATGTGTAGGAAATGTGGTAAAGCCTTTGCTGTTAGAGGGGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCATAAGAGATCGCTTAAAGACCACATCAAAGCCTTTGGGAATGGACATGGTGCTTATAATAGTAACATTAATAATAACGATGATCATCGTCAACAACAACAACATCATCATCATCATCATGCGTTCGATGAGGAGGACGAGTCGGCATATTCTGAAGTTGAGGAAGATCATGATTGA 1056 45.74 MDDPSTNFFTDLFKFNYPTNFHHHHHNPPSSNPPPNFFHAPPSSPPLRQALPLLRLSPTRSSQDHHLSFTSSSAMEIDNNNNNDNEDVSVTVALHIGLPSSNASEMATLLVSDNNNQNEEEDQLEEELEEEEDEDEEQQQAGITISGFSLSSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAYNSNINNNDDHRQQQQHHHHHHAFDEEDESAYSEVEEDHD 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 448777 450354 - CmaCh06G000800.1 Cma06g00080 295634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00080 351 MobiDBLite consensus disorder prediction 313 351 - -
Cma06g00080 351 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Cma06g00080 351 Gene3D Classic Zinc Finger 218 305 - -
Cma06g00080 351 PANTHER ZINC FINGER PROTEIN WIP2 21 322 IPR043584 GO:0003700|GO:0010468
Cma06g00080 351 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 21 322 - -
Cma06g00080 351 Gene3D Classic Zinc Finger 173 196 - -
Cma06g00080 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Cma06g00080 351 SMART c2h2final6 174 196 IPR013087 -
Cma06g00080 351 SMART c2h2final6 258 278 IPR013087 -
Cma06g00080 351 SUPERFAMILY beta-beta-alpha zinc fingers 240 278 IPR036236 -
Cma06g00080 351 MobiDBLite consensus disorder prediction 118 139 - -
Cma06g00080 351 Coils Coil 107 141 - -
Cma06g00080 351 MobiDBLite consensus disorder prediction 116 146 - -
Cma06g00080 351 MobiDBLite consensus disorder prediction 322 339 - -
Cma06g00080 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 278 IPR013087 -
Cma06g00080 351 MobiDBLite consensus disorder prediction 28 48 - -
Cma06g00080 351 MobiDBLite consensus disorder prediction 24 49 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00080 Cma14g00440 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00093 Cma-Chr3:930592 Cma06g00080 Cma-Chr6:448777 1.51E-134 dispersed
Cma04g02013 Cma-Chr4:12697785 Cma06g00080 Cma-Chr6:448777 9.16E-104 dispersed
Cma06g00080 Cma-Chr6:448777 Cma07g01295 Cma-Chr7:7333650 1.89E-129 dispersed
Cma15g00992 Cma-Chr15:5931166 Cma06g00080 Cma-Chr6:448777 2.39E-33 transposed
Cma14g00440 Cma-Chr14:2082202 Cma06g00080 Cma-Chr6:448777 2.60E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35136 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00080 - - csv:101208110 442.195