Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00083 ATGGAGATTGAAGTGGGGACTGTTGGTGGATCCAGTCCCATCAGGCGTCAGTTGAATTACACTGGACTTGAATCGCATCAATTCTTTGAAGAAATTCAGGGGTTGATGACGATTCCGTCGGAAAATGCTAGCTCCTTCACGGCGCTTTTGGAACTTCCGGCAACGCAGGCTTTGGAGCTTCTCCACTCGCCGGATTCCGCGGAGGTTAAGAAGGATGATTCCGTTCACCACCGTGTCAAATACGTTCCGAAACCCTACTTCAGTGCCTTAAATTGCAATTTGACCTTCCCGACGAACTCGCCTCTAAACGAACACGACGCCAAATTCTCTGTCGTGGCTGAAGAGCAACTGCCGGAGACGACGAGTTCAGTGCCGTTGAATTCGAGCGTCAGTTTGGAGAAAGTGAAGAACGAGCCCACCATTGAAACCGATTCGAACCCTAATCACTTGTATCCGAAAATCTCCGACCCGGCGGTGGAGAACAACACGAATCAGAGATCGGTGAAGAGGAAGGAGCGCGAGAAAAAGGGAAAAGGGTCATCAAAGAAGAGCAAGAACGAGAGCCAGGAAGATGCAGAGAAGCTCCCTTACGTTCATGTCCGAGCCGGCCGTGGTCAAGCGACAGACAAACATAGCCTAGCAGAGCGAGCAAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGATGCAATAAGATCTCAGGTACAGCTCTAGTGTTGGATGAAATCATCAACCATGTACAATCGCTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCCGTACACGAAAGCAACCTTCCAACCATGGTTATGCCATTGATGTGGTCAGAAATCTCCCCAAGTGGAAGCAGACAACAATATCAACAGCAATGGCATTTTGATGCAGCAGTAGTTAACCAGCTAGCGGGGGCGAGGGACGAGCATAACCTTCATACTTTCAGCACTCCTGAAAACTCTCTTTTAAGTTACGACTCTTCAGCAAATTCAGCATCTGTACACTCGAAATCAGTTGAAGATGGAGGCGTGAAGGCAGCATTATATTTTAGTTGTAGACGGGAAAGGAAAAATCTGAATCAAGAGATGAAGATGAATCAACATCCAATGGCAATTCTATTATTCTTTTTCTTCTCTCTCATCATCCATTCACGCTGCGTTGTTCCCTCAATCAGACTTCCCGGCGGATCAACCTCTTTCTCCGTCACCGACTTCGGAGCCATCGGCGATGGAGTCCACTACGACACTGCAGCGATTCAATCCGCTATTAACAGCTGCCCCTCGCCGGTCCGCTGCTACGTTATATTCCCGCCGGGTACCTACCTGACCGCGACGATATGGCTTCAATCCGGCGTCGTATTGGACATCCAACCTGGCGCCACCGTGCTTGCCGGAACGAGGATGGAGGACTATCCCATGGATTCGTCGAGGTGGTACGCGGTGGTGGCGGAGAACGCGAGCGATGTCGAGATCATCGGCGGAGGCGTGGTGGATGGGCAGGGGCTGAAATTCGTGGAGAAGTTCGATAAGAGGAAGAACGTGATGGTGAGTTGGAACAAGACCGGGGCGTGCTATGGCGATGAGTGCAGGCCGGATCTGATTGGGTTCATCGGGTCGAAGAATGTTAGGGTTTCGAATGTTAGTTTGAATCAGCCTGCTCACTGGTGCTTGCACCTGGTTCNATGTGAGAACACAATCATCGAAGATGTTTCAATTTATGGAGATTTCGATACACCAAACAACGACGGGATTGATATTGAAGACTCCAATAATACCTTCATTACAAGGTGCAGAATCGACACTGGGGATGATGCAATCTGCCCCAAAGCATCTAATGGCCCTGTCTTCAACTTAACTGCCACTAACTGCTGGATTAGAACCAAATCTTCTGCCATCAAGCTGGGTAGCGCCAGTTGGTTCAATTTCACCCGAATGCTCTTCGACAACATCACCATTGTCGATTCTCATCGAGGTCTGGGGTTCCAGCTGCGCGATGGAGGAAGTGCAAATGACATTACATTCTCAAACATGAACATAAGTACAAGATATTATGATCCTTCATGGTGGGGAAGAGCTGAGCCAATTTACGTTACGACTTGCCCTAGAGATCCAGGCTCGAAGGAGGGTTCAATCTCCAACGTAAACTTCATAAACATCACAGCAACCTCCGAAAATGGGGTTTTCTTGTCGGGATCGAAATCCGGAGTTCTGAGTAATCTGAGATTCAACAACGTGAAGTTGACCTACAAAAGATGGACAAAATATGGTGGTGGTATAGCAGACTACAGACCGGGTTGCCAAGGCTTTGTTAAACATGGGATGGCAGGTATGATTATGGAGCATATTGAAGGATTGAGTTTCGAAAATGTTGATATGAAATGGTCTGATGATGATGATGGATCATTACAGTGGAATAATCCTTTGGATTTTAGACCATCAACTGTGAGTAACATCTCTTTCTTGAACTTTCATTCAGGTTATTTAAGAGAATGA 2571 47.57 MEIEVGTVGGSSPIRRQLNYTGLESHQFFEEIQGLMTIPSENASSFTALLELPATQALELLHSPDSAEVKKDDSVHHRVKYVPKPYFSALNCNLTFPTNSPLNEHDAKFSVVAEEQLPETTSSVPLNSSVSLEKVKNEPTIETDSNPNHLYPKISDPAVENNTNQRSVKRKEREKKGKGSSKKSKNESQEDAEKLPYVHVRAGRGQATDKHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPVHESNLPTMVMPLMWSEISPSGSRQQYQQQWHFDAAVVNQLAGARDEHNLHTFSTPENSLLSYDSSANSASVHSKSVEDGGVKAALYFSCRRERKNLNQEMKMNQHPMAILLFFFFSLIIHSRCVVPSIRLPGGSTSFSVTDFGAIGDGVHYDTAAIQSAINSCPSPVRCYVIFPPGTYLTATIWLQSGVVLDIQPGATVLAGTRMEDYPMDSSRWYAVVAENASDVEIIGGGVVDGQGLKFVEKFDKRKNVMVSWNKTGACYGDECRPDLIGFIGSKNVRVSNVSLNQPAHWCLHLVXCENTIIEDVSIYGDFDTPNNDGIDIEDSNNTFITRCRIDTGDDAICPKASNGPVFNLTATNCWIRTKSSAIKLGSASWFNFTRMLFDNITIVDSHRGLGFQLRDGGSANDITFSNMNISTRYYDPSWWGRAEPIYVTTCPRDPGSKEGSISNVNFINITATSENGVFLSGSKSGVLSNLRFNNVKLTYKRWTKYGGGIADYRPGCQGFVKHGMAGMIMEHIEGLSFENVDMKWSDDDDGSLQWNNPLDFRPSTVSNISFLNFHSGYLRE 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 464304 470129 - CmaCh06G000830.1 Cma06g00083 295637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00083 856 Coils Coil 246 266 - -
Cma06g00083 856 Pfam Glycosyl hydrolases family 28 504 775 IPR000743 GO:0004650|GO:0005975
Cma06g00083 856 PANTHER PECTIN LYASE-RELATED 421 853 - -
Cma06g00083 856 MobiDBLite consensus disorder prediction 179 197 - -
Cma06g00083 856 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 256 IPR011598 GO:0046983
Cma06g00083 856 Gene3D - 203 275 IPR036638 GO:0046983
Cma06g00083 856 CDD bHLH_AtBPE_like 196 281 - -
Cma06g00083 856 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 421 853 - -
Cma06g00083 856 MobiDBLite consensus disorder prediction 120 150 - -
Cma06g00083 856 SUPERFAMILY Pectin lyase-like 418 784 IPR011050 -
Cma06g00083 856 Pfam Helix-loop-helix DNA-binding domain 210 257 IPR011598 GO:0046983
Cma06g00083 856 Gene3D - 417 782 IPR012334 -
Cma06g00083 856 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 275 IPR036638 GO:0046983
Cma06g00083 856 SMART finulus 212 262 IPR011598 GO:0046983
Cma06g00083 856 MobiDBLite consensus disorder prediction 120 197 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00083 Cma14g00438 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00083 Cma-Chr6:464304 Cma06g01607 Cma-Chr6:10016680 1.83E-39 dispersed
Cma14g00438 Cma-Chr14:2064459 Cma06g00083 Cma-Chr6:464304 1.58E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35137 PF00295 Glyco_hydro_28 3.50E-20 CL0268 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00083 - - bhj:120092181 876.7