Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00087 ATGGCTTCCTCCAATATTAAAACCAGCTCCATCAGTGAAGAAGAAGAAGAAGCACGACAACTACTCCATCATCATCATCAACAACAACAACAACAACATCAGCTTTTGCAAACTCCAAACTTTGTCATCCCCAAAAATCCATCATCATTCAGCTTCCAAAATCAAGACTTTCATCATCATCAATTACCTTTCTCTATGAATCTCCCTTCCATCTCTCCAAATTTCATAAGCAAAGATGGAGGAGGTGATGATTTGGGAGAATTGGATCATGCCCTTTTTCTATATCTTGATGGACAAGAACCCTCCACAAACATCACTCAACAAGATCAAAGACAGAGTTCGGGGATGAGACCACCGACGTTGAACATCTTCCCGTCGCAGCCGATGCACGTCGACCCATTGCCAGCAAAAGCAAACACAGCATTGGTTAACCATGGTGATTCAAAGATCAAAGCATCAGAGCCATCCAAGGAGTTGGCCAACCAACGCAGCGGTGGAGCCACTCCATCCGGACCACCCCCAACTCCAAACCCAAACCCAAACCCAACTACAACAATAACCGAACCTCATGCCAAACCTCCAAAACGTGAGGCTAACAAGAAAGGGCTGACCTCAAGCTCAGAGCAAGAAGGACCCAAAACTCCAGACCCCAAGACTCTTAGAAGGCTGGCTCAGAACCGAGAGGCTGCAAGAAAAAGCAGGCTAAGAAAAAAGGCCTATGTTCAGCAGTTGGAGCTGAGTAGGATTAAGCTGACGCAGCTGGAGCAAGAGCTACAAAGAGCAAGAACTCAGGGTATGCTTGTGGGTGGTGGAGCAGCCATTTTAGGAGCTGACCAAGGACTTCCCCCTGGTTTCCATAACCTCACCTCCGATGCTGCAGTGTTCGACATTGAGTATAGGCGGTGGCAGGAGGAGCACCACCGGCTGATGTGCGAGCTCCGAGCAGCCGTGCAGGAGCATTTACCGGAAAACGAGCTCCGATTGTTTGTCGACAACTGCCTTGTCCACTATGACGAGGTTTTGAACTTGAAAATGATGGTGGCTAAGTCCGACGTCTTCCACCTTGTCTCCGGCATGTGGAAGACGCCGGCGGAGAGATGCTTCCTGTGGATGGGCGATTTTAGGCCCTCTGAGCTCCTTAAGATAGTAATGGGTGAAATAGAGCCATTAACAGAGCATCAAATATTGAACATTTGTGGATTGCAACAATCCACACAAGAGAGCGAGGAGGCATTGTCTGAAGGCCTTGAAGCCCTTAACCAGTCCTTATCAGACACCATCGCCGCTGATTCATTGAGTAACCCTCCCAATATGGCTAACTACATGGGCCAGATGACCTTAGCCATCAACAAGCTCTCTACCCTTGAAGGCTTTGTACGACAGGCAGACCATTTGAGACATCAAACCATTCATCGATTGCATCAAATGTTGACGACCCGACAAGCTGCACGATGTCTGCTAGCCATTGCGGAGTATTTTCATCGACTTCGAGCTCTTAGTTCCTTGTGGTTAGCTCGACCGAGGCAGGATTGA 1533 48.27 MASSNIKTSSISEEEEEARQLLHHHHQQQQQQHQLLQTPNFVIPKNPSSFSFQNQDFHHHQLPFSMNLPSISPNFISKDGGGDDLGELDHALFLYLDGQEPSTNITQQDQRQSSGMRPPTLNIFPSQPMHVDPLPAKANTALVNHGDSKIKASEPSKELANQRSGGATPSGPPPTPNPNPNPTTTITEPHAKPPKREANKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLELSRIKLTQLEQELQRARTQGMLVGGGAAILGADQGLPPGFHNLTSDAAVFDIEYRRWQEEHHRLMCELRAAVQEHLPENELRLFVDNCLVHYDEVLNLKMMVAKSDVFHLVSGMWKTPAERCFLWMGDFRPSELLKIVMGEIEPLTEHQILNICGLQQSTQESEEALSEGLEALNQSLSDTIAADSLSNPPNMANYMGQMTLAINKLSTLEGFVRQADHLRHQTIHRLHQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 480546 484762 - CmaCh06G000870.1 Cma06g00087 295641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00087 510 MobiDBLite consensus disorder prediction 169 183 - -
Cma06g00087 510 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 216 260 IPR004827 GO:0003700|GO:0006355
Cma06g00087 510 Pfam bZIP transcription factor 218 254 IPR004827 GO:0003700|GO:0006355
Cma06g00087 510 Coils Coil 237 264 - -
Cma06g00087 510 Coils Coil 299 319 - -
Cma06g00087 510 ProSiteProfiles DOG1 domain profile. 292 506 IPR025422 GO:0006351|GO:0043565
Cma06g00087 510 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 89 509 - -
Cma06g00087 510 CDD bZIP_HBP1b-like 218 270 - -
Cma06g00087 510 Gene3D - 217 266 - -
Cma06g00087 510 Pfam Seed dormancy control 310 384 IPR025422 GO:0006351|GO:0043565
Cma06g00087 510 SMART brlzneu 214 277 IPR004827 GO:0003700|GO:0006355
Cma06g00087 510 MobiDBLite consensus disorder prediction 99 221 - -
Cma06g00087 510 PANTHER TRANSCRIPTION FACTOR TGA9 89 509 - -
Cma06g00087 510 Coils Coil 11 31 - -
Cma06g00087 510 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 221 236 IPR004827 GO:0003700|GO:0006355
Cma06g00087 510 MobiDBLite consensus disorder prediction 1 32 - -
Cma06g00087 510 MobiDBLite consensus disorder prediction 99 121 - -
Cma06g00087 510 MobiDBLite consensus disorder prediction 10 24 - -
Cma06g00087 510 SUPERFAMILY Leucine zipper domain 218 260 IPR046347 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00087 Cma14g00509 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00087 Cma-Chr6:480546 Cma12g00124 Cma-Chr12:511435 1.19E-129 dispersed
Cma18g00849 Cma-Chr18:7429501 Cma06g00087 Cma-Chr6:480546 1.12E-106 dispersed
Cma14g00434 Cma-Chr14:2044200 Cma06g00087 Cma-Chr6:480546 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35138 PF14144 DOG1 1.90E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00087 K14431 - csv:101204923 790.415