Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00101 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGGCGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCGTTAGAGGACTCTTTGTTGTGGAGCAGAGAGCTTGAAAAGCATTCTTATGGGGAGTTTTCTTTTGCTGTGGTTCAAGCGAATGAGGTAATTGAGGATAATAGTCAGGTTGAGGCTGGCCGTGATGCCACTTTTGTCGGCGTTTATGATGGCCATGGTGGCGCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAGGAATTTAATGAGGCTTGCTCAAGAACATGGAACCATAACCGAAGACACCGTCCGGAATGCATTTTCTGCTACTGAGGAAGGGTTTCTTACCCTTGTTCGTCGGTCTTGGGGTATCAAACCGACAATTGCAGCAATGGGATCTTGTTGCCTGGTCGGAGTTATCTGGAGAGGTACATTGTTCATCGGTAACGTTGGTGATTCCCGGGCTGTCATCGGTTCTTTAGGTAAAGCTAATAAGATAGTTGCAGAACAGTTGACAAAGGATCACAATGCAAGTATTGAGGAGGTTCGACAAGAACTCCGGTCCTTGCATCCCGATGACTCACATATTGTCGTTATGAAGCACGGAGTCTGGCGTATAAAAGGCATAATTCAGGTTTCCAGATCAATAGGTGATGCGTATTTGAAAAGGTCGGAATTCTCTCTCGATCCATCCTTTCCACGGTTCCACCTTGCCGAGCCTCTTCGACGACCTGTTCTTACTGCCGAACCATCATTAAGCACAAGAGTTCTACAACCTCATGACAAGTTTCTCATATTTGCATCTGATGGTCTTTGGGAGCAACTATCGAATCAACAAGCTGTCGAGATTGTGTATAAAAACCCACGAGCGGGAATCGCAAAAAGACTTGTCAAAACAGCATTAACCGAGGCTGCAAGGAAGAGGGAGATGAGATATGATGATCTGAAGAAGCTCGAAAAAGGGATACGACGATTCTTTCACGACGATATCACAGTTGTTGTCATATTTCTGGACAACGAATTGCAAGGGAAGAAGGCACATGTACCAGAATTATCCATTCGTGGGTTCACCGACACGGTTGGACCATCGAATTTCAACATTCTTCAAGGCATCGATGAGAATGGAAGATCTGTTGGGTGA 1173 45.52 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDSLLWSRELEKHSYGEFSFAVVQANEVIEDNSQVEAGRDATFVGVYDGHGGADASRFICDHLFRNLMRLAQEHGTITEDTVRNAFSATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLFIGNVGDSRAVIGSLGKANKIVAEQLTKDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKRSEFSLDPSFPRFHLAEPLRRPVLTAEPSLSTRVLQPHDKFLIFASDGLWEQLSNQQAVEIVYKNPRAGIAKRLVKTALTEAARKREMRYDDLKKLEKGIRRFFHDDITVVVIFLDNELQGKKAHVPELSIRGFTDTVGPSNFNILQGIDENGRSVG 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 548599 551596 + CmaCh06G001010.1 Cma06g00101 295655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00101 390 Gene3D - 27 358 IPR036457 -
Cma06g00101 390 SMART PP2C_4 43 346 IPR001932 -
Cma06g00101 390 CDD PP2Cc 47 348 IPR001932 -
Cma06g00101 390 PANTHER ALPHABET, ISOFORM E-RELATED 4 373 - -
Cma06g00101 390 SUPERFAMILY PP2C-like 53 350 IPR036457 -
Cma06g00101 390 PANTHER PROTEIN PHOSPHATASE 2C 43-RELATED 4 373 - -
Cma06g00101 390 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
Cma06g00101 390 Pfam Protein phosphatase 2C 68 316 IPR001932 -
Cma06g00101 390 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00101 Cma14g00416 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00101 Cma-Chr6:548599 Cma03g00656 Cma-Chr3:5525611 4.22E-149 dispersed
Cma14g00416 Cma-Chr14:1953999 Cma06g00101 Cma-Chr6:548599 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00101 K01102 - csv:101222146 728.783