Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00102 ATGGGAGTTCAAAGCGAGGGAGAGGGGCGGGTAGTTTCTTTCTCTCTCGAGACTCTGTTCATTGCCATTGCCATTGCCATTGCCACTGCCACCACCTTTCTACAGTTTCAAGAGCTCGAAGCTTTCCTGATTTCAAAGACAATGGCAGATTCCGAGGATATTCAGCCTCTCGTCTGTGATAACGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTATTCCCTAGCATTGTCGGTCGACCCAGGCACACGGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAGGCTCAATCGAAGAGGGGTATTTTGACTTTAAAATACCCAATTGAGCATGGTATTGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAACATCCAGTTCTGCTCACAGAAGCACCCTTGAATCCCAAGGCCAATAGAGAGAAAATGACCCAAATAATGTTTGAGACCTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTCTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTATGGATTCTGGTGATGGTGTCAGCCACACAGTACCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGACTTGGCTGGCCGTGATCTCACAGATGGTCTAATGAAAATCTTAACTGAACGTGGTTACTCTTTCACCACATCCGCGGAGCGTGAAATTGTTAGAGATATGAAGGAGAAATTAGCTTACATAGCCCTGGATTACGAGCAAGAGCTGGAGACATCAAAAACCAGCTCTTCCGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCCTCTTCCAGCCATCCATGATTGGGATGGAAGCAGCTGGTATTCATGAAACCACATACAATTCTATCATGAAATGTGATGTCGATATCAGAAAGGATCTCTATGGCAATATCGTCCTCAGTGGTGGTTCCACCATGTTTACTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAACGAAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATCGCTAAGGCGGAGTATGATGAATCCGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1275 47.45 MGVQSEGEGRVVSFSLETLFIAIAIAIATATTFLQFQELEAFLISKTMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 551928 555274 - CmaCh06G001020.1 Cma06g00102 295656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00102 424 Gene3D - 187 387 - -
Cma06g00102 424 ProSitePatterns Actins signature 2. 405 413 IPR004001 -
Cma06g00102 424 ProSitePatterns Actins signature 1. 102 112 IPR004001 -
Cma06g00102 424 SUPERFAMILY Actin-like ATPase domain 53 201 IPR043129 -
Cma06g00102 424 ProSitePatterns Actins and actin-related proteins signature. 153 165 IPR020902 -
Cma06g00102 424 PANTHER ACTIN-97 48 423 - -
Cma06g00102 424 CDD NBD_sugar-kinase_HSP70_actin 57 230 - -
Cma06g00102 424 SUPERFAMILY Actin-like ATPase domain 196 424 IPR043129 -
Cma06g00102 424 SMART actin_3 54 424 IPR004000 -
Cma06g00102 424 Gene3D - 57 418 - -
Cma06g00102 424 Gene3D Actin; Chain A, domain 4 229 320 - -
Cma06g00102 424 PRINTS Actin signature 75 84 IPR004000 -
Cma06g00102 424 PRINTS Actin signature 98 109 IPR004000 -
Cma06g00102 424 PRINTS Actin signature 110 132 IPR004000 -
Cma06g00102 424 PRINTS Actin signature 164 177 IPR004000 -
Cma06g00102 424 PRINTS Actin signature 285 301 IPR004000 -
Cma06g00102 424 PRINTS Actin signature 189 208 IPR004000 -
Cma06g00102 424 Pfam Actin 52 424 IPR004000 -
Cma06g00102 424 PANTHER ACTIN 48 423 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00427 Cma-Chr3:4537903 Cma06g00102 Cma-Chr6:551928 0 dispersed
Cma03g01077 Cma-Chr3:7386277 Cma06g00102 Cma-Chr6:551928 0 dispersed
Cma04g00220 Cma-Chr4:1062715 Cma06g00102 Cma-Chr6:551928 0 dispersed
Cma04g01189 Cma-Chr4:6071036 Cma06g00102 Cma-Chr6:551928 0 dispersed
Cma04g02644 Cma-Chr4:18005520 Cma06g00102 Cma-Chr6:551928 0 dispersed
Cma06g00102 Cma-Chr6:551928 Cma15g00386 Cma-Chr15:1755346 0 dispersed
Cma20g01073 Cma-Chr20:8126203 Cma06g00102 Cma-Chr6:551928 0 dispersed
Cma14g00415 Cma-Chr14:1949873 Cma06g00102 Cma-Chr6:551928 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00102 K10355 - psom:113309355 743.806