Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00107 ATGGGTGACGAAATCTTTGATGCCATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCTCCTTCAAACTCTCCAAATGAAGATGTGAATTTAGCTAATTTGATTGAGGACCCTGTACATAGATTTGGAGACGCTATCAGGTTTAGGACGAGACATCGATGGAGAAGGCGTCAAGTCCAAATTCCTTCTGGGACTCAGAATATTTCATTGGAATTGAGTGAAATTATGGTCAATTCAGTCAATGGGAATTCATTACAGCCATTACAGGCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAAGCAGGGAAAACTTGTGAAATTAACAATGAAGCTTTGGAAGATGAAAAGGCAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGTAATATATGTCTGGACTTGGCTAGGGACCCTGTTGTTACTTGTTGTGGTCACCTATACTGCTGGCCGTGCCTTTATCGATGGCTACATCTACATTCAGATGCCAAGGAATGCCCTGTATGTAAAGGAGAGGTTACCATGAAGACTGTGACGCCAATTTATGGTCGTGGCAGCAACACGCCTATGACAGAGGAGGATGCTGCACTTAAGATTCCTCTAAGGCCTCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATTCAGAGGACTGCACTTAATTTCCCTATGGATGAGATGATTCGTCGATTGGGGAATAGATTTGATTTCAATCGTGATCTAGACCAACCGCCGGAGCCAGACGGTTCACATGAAACATTTGGTCGATCTCCAACCTTGTTGAATAGGATTTTAACGTCCAGGGGAATTCGTAGAGAACAAATTTCACTACACCCCCATGATGATGTAGGAGTTTTAGAACTCCCTCATGCGTCTGGCACCGAGGCAGGAGATACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACAGGACAAGAGTTTCTTCTCTTACCTCTGCGTTTAATACTGCTGATAGGCTTCCAGAGGGCTTTTTGTACACCGATCCGCTCGTTCCTAGACATCAAGAGCAGCCTCCTCCGCCTGTGGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATCAATTCTGAGAGTCAAATGGACACCGCTGTAGAAATTGATTCCATGGTCTCCCATTCAACATCATCATCCAGAAGAAGAAATGATTCTTTGCAGGTTTCCGATGTAGACAGTGGAAACTCTCGGGCGCCCAGACGGAGAAGATTGGCATGA 1275 44.63 MGDEIFDAMNLDLNLGPIPEPPSNSPNEDVNLANLIEDPVHRFGDAIRFRTRHRWRRRQVQIPSGTQNISLELSEIMVNSVNGNSLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKAENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTMKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNRFDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHASGTEAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 576243 577517 + CmaCh06G001070.1 Cma06g00107 295661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00107 424 MobiDBLite consensus disorder prediction 385 424 - -
Cma06g00107 424 CDD RING-HC_AtRMA_like 138 182 - -
Cma06g00107 424 PANTHER OS01G0830200 PROTEIN 20 422 - -
Cma06g00107 424 SUPERFAMILY RING/U-box 136 193 - -
Cma06g00107 424 SMART ring_2 140 180 IPR001841 -
Cma06g00107 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 422 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cma06g00107 424 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Cma06g00107 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 200 IPR013083 -
Cma06g00107 424 ProSitePatterns Zinc finger RING-type signature. 155 164 IPR017907 -
Cma06g00107 424 MobiDBLite consensus disorder prediction 385 413 - -
Cma06g00107 424 Pfam Zinc finger, C3HC4 type (RING finger) 140 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00107 Cma-Chr6:576243 Cma14g01031 Cma-Chr14:5440296 1.25E-36 dispersed
Cma11g01553 Cma-Chr11:10101587 Cma06g00107 Cma-Chr6:576243 4.41E-07 dispersed
Cma14g00411 Cma-Chr14:1923257 Cma06g00107 Cma-Chr6:576243 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00107 K10666 - csv:101220497 723.776