Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00107 | ATGGGTGACGAAATCTTTGATGCCATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCTCCTTCAAACTCTCCAAATGAAGATGTGAATTTAGCTAATTTGATTGAGGACCCTGTACATAGATTTGGAGACGCTATCAGGTTTAGGACGAGACATCGATGGAGAAGGCGTCAAGTCCAAATTCCTTCTGGGACTCAGAATATTTCATTGGAATTGAGTGAAATTATGGTCAATTCAGTCAATGGGAATTCATTACAGCCATTACAGGCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAAGCAGGGAAAACTTGTGAAATTAACAATGAAGCTTTGGAAGATGAAAAGGCAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGTAATATATGTCTGGACTTGGCTAGGGACCCTGTTGTTACTTGTTGTGGTCACCTATACTGCTGGCCGTGCCTTTATCGATGGCTACATCTACATTCAGATGCCAAGGAATGCCCTGTATGTAAAGGAGAGGTTACCATGAAGACTGTGACGCCAATTTATGGTCGTGGCAGCAACACGCCTATGACAGAGGAGGATGCTGCACTTAAGATTCCTCTAAGGCCTCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATTCAGAGGACTGCACTTAATTTCCCTATGGATGAGATGATTCGTCGATTGGGGAATAGATTTGATTTCAATCGTGATCTAGACCAACCGCCGGAGCCAGACGGTTCACATGAAACATTTGGTCGATCTCCAACCTTGTTGAATAGGATTTTAACGTCCAGGGGAATTCGTAGAGAACAAATTTCACTACACCCCCATGATGATGTAGGAGTTTTAGAACTCCCTCATGCGTCTGGCACCGAGGCAGGAGATACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACAGGACAAGAGTTTCTTCTCTTACCTCTGCGTTTAATACTGCTGATAGGCTTCCAGAGGGCTTTTTGTACACCGATCCGCTCGTTCCTAGACATCAAGAGCAGCCTCCTCCGCCTGTGGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATCAATTCTGAGAGTCAAATGGACACCGCTGTAGAAATTGATTCCATGGTCTCCCATTCAACATCATCATCCAGAAGAAGAAATGATTCTTTGCAGGTTTCCGATGTAGACAGTGGAAACTCTCGGGCGCCCAGACGGAGAAGATTGGCATGA | 1275 | 44.63 | MGDEIFDAMNLDLNLGPIPEPPSNSPNEDVNLANLIEDPVHRFGDAIRFRTRHRWRRRQVQIPSGTQNISLELSEIMVNSVNGNSLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKAENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTMKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNRFDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHASGTEAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA | 424 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 576243 | 577517 | + | CmaCh06G001070.1 | Cma06g00107 | 295661 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00107 | 424 | MobiDBLite | consensus disorder prediction | 385 | 424 | - | - | |
Cma06g00107 | 424 | CDD | RING-HC_AtRMA_like | 138 | 182 | - | - | |
Cma06g00107 | 424 | PANTHER | OS01G0830200 PROTEIN | 20 | 422 | - | - | |
Cma06g00107 | 424 | SUPERFAMILY | RING/U-box | 136 | 193 | - | - | |
Cma06g00107 | 424 | SMART | ring_2 | 140 | 180 | IPR001841 | - | |
Cma06g00107 | 424 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 20 | 422 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Cma06g00107 | 424 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 181 | IPR001841 | - | |
Cma06g00107 | 424 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 200 | IPR013083 | - | |
Cma06g00107 | 424 | ProSitePatterns | Zinc finger RING-type signature. | 155 | 164 | IPR017907 | - | |
Cma06g00107 | 424 | MobiDBLite | consensus disorder prediction | 385 | 413 | - | - | |
Cma06g00107 | 424 | Pfam | Zinc finger, C3HC4 type (RING finger) | 140 | 185 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00107 | Cma-Chr6:576243 | Cma14g01031 | Cma-Chr14:5440296 | 1.25E-36 | dispersed | |
Cma11g01553 | Cma-Chr11:10101587 | Cma06g00107 | Cma-Chr6:576243 | 4.41E-07 | dispersed | |
Cma14g00411 | Cma-Chr14:1923257 | Cma06g00107 | Cma-Chr6:576243 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00107 | K10666 | - | csv:101220497 | 723.776 |