Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00108 ATGGAGTTGGGTTTGAGGCTTGGTGATGCTCCCAATTCAAATAACCCATTTGGGGTTCGCTCTATTCCTTCTCATAACCTTTCTTCTTCTTCTCTCATGGCTTTAGGGTTTTGTGTTGGATTGGGACATGGTTCTGGTTCTGGTTCTGGTTCTGGTTCTGGTTCCGGATCCGGTCGGGTTCGTGATGAAGATGGACGAGATGTAAAAGATGAAGATGAGAAGGATGATGAAAAAACTATTCCTGGTTCTGGGTATGGTTTGGATCCGCCGGTTCAGCTGGATCTTCTTCCTTTGGCTCCGGTTCCTCGTTCTTCTCCTCAGTCTTCTTCTCCCCTTCCATTTTCCTGCCTTCCTCATCCCTTGATGCCGGAACTGGGTTGTACGGACAAAGTATTGGACGTAAGCCGGCCGCCGGCGTTGGCGGCAGCCGTGGCAATGATACCGGCGGAGGAGACAGAAGACAAGTCTCCGAACAGTACGGTAACATCTTTCCAGATGGATTTTGGGGTCAGAAATGGAGGAGGAAGAGGAAGAACAAGAAGCAAGAGATCATCAGACATGGAAATGGAGACCGAAAGGTCGTCGTCAAGAATCAGCGACGATGAAGAAAACGCATCTGCTCGGAAAAAGCTCCGACTTTCTAAAGAACAATCCGCTTTTCTCGAACAATGCTTCAAACAACACAGCACCCTCAATCCTAAGCAGAAGGCAGCACTGGCCAAGCAGCTAAATCTCCGACCAAGACAAGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGAGGATTGTGAGTATTTAAAGAGATGGTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAGGAACTTCAAGAATTAAGAGCCTTCAAAGCTTCTCAGCCGTTTTACAGTCACCTCCCAGCCACCACCCTCACCATGTGCCCGTCCTGCGAGCGGGTCGTCGCCACCGCTCCCGCCGCCTCCATCGCCACCACCTCCACCACCACTGCAGCCCCGCCAAGGATATTGATATGA 1038 49.42 MELGLRLGDAPNSNNPFGVRSIPSHNLSSSSLMALGFCVGLGHGSGSGSGSGSGSGSGRVRDEDGRDVKDEDEKDDEKTIPGSGYGLDPPVQLDLLPLAPVPRSSPQSSSPLPFSCLPHPLMPELGCTDKVLDVSRPPALAAAVAMIPAEETEDKSPNSTVTSFQMDFGVRNGGGRGRTRSKRSSDMEMETERSSSRISDDEENASARKKLRLSKEQSAFLEQCFKQHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEEDCEYLKRWCETLTEENRRLQKELQELRAFKASQPFYSHLPATTLTMCPSCERVVATAPAASIATTSTTTAAPPRILI 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 584033 586172 + CmaCh06G001080.1 Cma06g00108 295662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00108 345 Gene3D - 212 262 - -
Cma06g00108 345 MobiDBLite consensus disorder prediction 179 209 - -
Cma06g00108 345 MobiDBLite consensus disorder prediction 153 167 - -
Cma06g00108 345 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 338 - -
Cma06g00108 345 Pfam Homeobox associated leucine zipper 264 296 IPR003106 GO:0006355|GO:0043565
Cma06g00108 345 ProSitePatterns 'Homeobox' domain signature. 239 262 IPR017970 GO:0000981|GO:0006355
Cma06g00108 345 MobiDBLite consensus disorder prediction 151 209 - -
Cma06g00108 345 Coils Coil 277 300 - -
Cma06g00108 345 CDD homeodomain 208 265 IPR001356 GO:0003677
Cma06g00108 345 SUPERFAMILY Homeodomain-like 194 265 IPR009057 -
Cma06g00108 345 PANTHER - 1 338 - -
Cma06g00108 345 MobiDBLite consensus disorder prediction 45 112 - -
Cma06g00108 345 ProSiteProfiles 'Homeobox' domain profile. 204 264 IPR001356 GO:0003677
Cma06g00108 345 SMART HOX_1 206 268 IPR001356 GO:0003677
Cma06g00108 345 SMART halz 264 307 IPR003106 GO:0006355|GO:0043565
Cma06g00108 345 MobiDBLite consensus disorder prediction 59 81 - -
Cma06g00108 345 Pfam Homeodomain 208 262 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00108 Cma14g00410 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00108 Cma-Chr6:584033 Cma17g00930 Cma-Chr17:6988226 1.22E-93 dispersed
Cma14g00410 Cma-Chr14:1912100 Cma06g00108 Cma-Chr6:584033 1.48E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35141 PF00046 Homeodomain 6.10E-16 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00108 K09338 - csv:101222778 300.441