Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00108 | ATGGAGTTGGGTTTGAGGCTTGGTGATGCTCCCAATTCAAATAACCCATTTGGGGTTCGCTCTATTCCTTCTCATAACCTTTCTTCTTCTTCTCTCATGGCTTTAGGGTTTTGTGTTGGATTGGGACATGGTTCTGGTTCTGGTTCTGGTTCTGGTTCTGGTTCCGGATCCGGTCGGGTTCGTGATGAAGATGGACGAGATGTAAAAGATGAAGATGAGAAGGATGATGAAAAAACTATTCCTGGTTCTGGGTATGGTTTGGATCCGCCGGTTCAGCTGGATCTTCTTCCTTTGGCTCCGGTTCCTCGTTCTTCTCCTCAGTCTTCTTCTCCCCTTCCATTTTCCTGCCTTCCTCATCCCTTGATGCCGGAACTGGGTTGTACGGACAAAGTATTGGACGTAAGCCGGCCGCCGGCGTTGGCGGCAGCCGTGGCAATGATACCGGCGGAGGAGACAGAAGACAAGTCTCCGAACAGTACGGTAACATCTTTCCAGATGGATTTTGGGGTCAGAAATGGAGGAGGAAGAGGAAGAACAAGAAGCAAGAGATCATCAGACATGGAAATGGAGACCGAAAGGTCGTCGTCAAGAATCAGCGACGATGAAGAAAACGCATCTGCTCGGAAAAAGCTCCGACTTTCTAAAGAACAATCCGCTTTTCTCGAACAATGCTTCAAACAACACAGCACCCTCAATCCTAAGCAGAAGGCAGCACTGGCCAAGCAGCTAAATCTCCGACCAAGACAAGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGAGGATTGTGAGTATTTAAAGAGATGGTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAGGAACTTCAAGAATTAAGAGCCTTCAAAGCTTCTCAGCCGTTTTACAGTCACCTCCCAGCCACCACCCTCACCATGTGCCCGTCCTGCGAGCGGGTCGTCGCCACCGCTCCCGCCGCCTCCATCGCCACCACCTCCACCACCACTGCAGCCCCGCCAAGGATATTGATATGA | 1038 | 49.42 | MELGLRLGDAPNSNNPFGVRSIPSHNLSSSSLMALGFCVGLGHGSGSGSGSGSGSGSGRVRDEDGRDVKDEDEKDDEKTIPGSGYGLDPPVQLDLLPLAPVPRSSPQSSSPLPFSCLPHPLMPELGCTDKVLDVSRPPALAAAVAMIPAEETEDKSPNSTVTSFQMDFGVRNGGGRGRTRSKRSSDMEMETERSSSRISDDEENASARKKLRLSKEQSAFLEQCFKQHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEEDCEYLKRWCETLTEENRRLQKELQELRAFKASQPFYSHLPATTLTMCPSCERVVATAPAASIATTSTTTAAPPRILI | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 584033 | 586172 | + | CmaCh06G001080.1 | Cma06g00108 | 295662 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00108 | 345 | Gene3D | - | 212 | 262 | - | - | |
Cma06g00108 | 345 | MobiDBLite | consensus disorder prediction | 179 | 209 | - | - | |
Cma06g00108 | 345 | MobiDBLite | consensus disorder prediction | 153 | 167 | - | - | |
Cma06g00108 | 345 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 1 | 338 | - | - | |
Cma06g00108 | 345 | Pfam | Homeobox associated leucine zipper | 264 | 296 | IPR003106 | GO:0006355|GO:0043565 | |
Cma06g00108 | 345 | ProSitePatterns | 'Homeobox' domain signature. | 239 | 262 | IPR017970 | GO:0000981|GO:0006355 | |
Cma06g00108 | 345 | MobiDBLite | consensus disorder prediction | 151 | 209 | - | - | |
Cma06g00108 | 345 | Coils | Coil | 277 | 300 | - | - | |
Cma06g00108 | 345 | CDD | homeodomain | 208 | 265 | IPR001356 | GO:0003677 | |
Cma06g00108 | 345 | SUPERFAMILY | Homeodomain-like | 194 | 265 | IPR009057 | - | |
Cma06g00108 | 345 | PANTHER | - | 1 | 338 | - | - | |
Cma06g00108 | 345 | MobiDBLite | consensus disorder prediction | 45 | 112 | - | - | |
Cma06g00108 | 345 | ProSiteProfiles | 'Homeobox' domain profile. | 204 | 264 | IPR001356 | GO:0003677 | |
Cma06g00108 | 345 | SMART | HOX_1 | 206 | 268 | IPR001356 | GO:0003677 | |
Cma06g00108 | 345 | SMART | halz | 264 | 307 | IPR003106 | GO:0006355|GO:0043565 | |
Cma06g00108 | 345 | MobiDBLite | consensus disorder prediction | 59 | 81 | - | - | |
Cma06g00108 | 345 | Pfam | Homeodomain | 208 | 262 | IPR001356 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma06g00108 | Cma14g00410 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00108 | Cma-Chr6:584033 | Cma17g00930 | Cma-Chr17:6988226 | 1.22E-93 | dispersed | |
Cma14g00410 | Cma-Chr14:1912100 | Cma06g00108 | Cma-Chr6:584033 | 1.48E-104 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35141 | PF00046 | Homeodomain | 6.10E-16 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00108 | K09338 | - | csv:101222778 | 300.441 |