Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00120 ATGGCAGAAGAGGATACCCTCTCTGAAATTTCTGAATCTTCTTCGTCTTCTTCAGCTCTCACTTCTCCAATGTCTACTCCCTTGAGGAAGGTGTTCTGTAGAATTTCAGGCCTTGCAAGTTCTCTGAGAAGAAACACAGCCCCTCACAGTAGAAGAATCTTTCACAGAGATGTTGAGCAGCAAGAGTTTCAATATGCTAACTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGTCTTGCCATAATGGTGATGCTTGCTATTTTGATTGGGCTGTTGACAGTTCTCACATGGCATTTCACAAAGAGCTACACAGCAGAGTCACTACATAGCTTGGCGTATGGTCTTCGCCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTAAATTCCACGGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCTACTAATCAAGCAGAGCAAGTTGAGCTGTATGAAGCAATGAGGGATGTTACGTGGGCGATGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTCCAGGCATTCCATCGAGATCATACAAGCAACAATACGTTTTATATTTACTCAGATCTTACAAACTATACCATTAGTGCCACTGAATCACATAATATCAATCGGCTTTCGTCGGGTGAAGGGTGGTCAGAGCCACACATACACGGAAATATGTCTGCAAAATGGTATAGGGAACCACTTGATCCTATTAGTGGCCAGAAGATCGGGAAAGCAAAGCAAATCCCACCAGAGGACTTGATTAGTATTGCTGGCATTTCACAATTAGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCGTTGCTTTCTGCAGCCCTGCCTGTTTCTGATGCTTCGAATGAAAGCATAGTTGCGGTGGTGGGCGTTACAACCTCACTTTATAGTGTAGGTCAACTAATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCTCTGTTAAGAAATACGTCAAGTGGTCCAAAGCTCACGATGGCTGTTGATTCCCAGGACGATGTGATTCGATTAGGAGCAGAGCGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGACATGAGGTTCATGAAGAGAACGTCAAGCTTGGTGATCAGCAATATTACATCGACTCGTTTTTTCTTAATCTGAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTGTCAAAACATTGGTTATACTGATTTCTGCATCCTTATGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAGCTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATTGGATTACTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTGCAACGGTTACTCAAATTCGAAAATGCTCAACCGCTCTACTCCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCCGGAAAGCTAGTTTTGGAAGATGCCGAGTTTGACCTGGGACGAGAACTTGAAGGGCTTGTTGATGTGTTCTCTGTGCAGTGCATTAACCATAATGTGGAGACTGTATTGGATCTCTCTGATGATATGCCAAAATTAGTTCGAGGAGACTCGGGTCGAGTTGTTCAAATTTTCACGAACTTGATCAGCAATTCTATCAAATTCACAACCTCTGGCCACATCATTCTTCGGGGGTGGTGTGAGATGTCGAATAATCTCAACGACGTAGGCAATTTCTGTACCGATCGGAAGAAATCACGATTTCCTAATTGGACAAAGATGAAACAACAGGGAGACCACACAAAGAACGAAAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGGATGGATCCAAGAAAATGGGAATCTGTTTTCGAGAGCTTTGAGCAAGCAGATCCCTCGACAACCCGAACGCATGGTGGAACGGGTCTTGGATTATGCATCGTACGTACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCGGGAACGTTGATGCGACTTTATTTGGTTCTTAGCACGCCTGTAGATTCGATGGATAATCACTGTCAGCTTGATTTCACACAACATAATGCAGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCATGTCACAGTGGCTTCGTAAAATCGGACTTCTCACATTAGAAGCTTCAGAGTGGAATGAACTAACACTAATCCTTCAGGAACTCTTTCAAGCCAGAAGTTCAGAAACTAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAACCATTACGAGCAGAGCTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATCGTTGCCGATATTGGGATACTCGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGATAAGTACTCTGGAAAAGCAAAATTCGCGTGGATGTTAAATCACGATACGTCCAACGCCATTAAGATGGAGCTCCGGGGAAAAGGGCACATTATATTGAACAATAAGCCATTGTACAAAGCAAAAATGGTTCATATTTTGGAAGCTGCTATGAAGGACAGAAATCTTGAGTTGCAGAAGAAAAGCGCTTCAAGAATTGCATCAAAGGAAGGGAATTATCATGAATGCCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCCGATGATTCTGATATATCTGAACTTAGCAATTGCAACTCTCAGTGTGCAAAATTTCAAGTCAAAGACACTCTAGAAGAACCGATAGCGAAACCATGTCAGTCGCCATTTTCGCCCGTTAACCATAGCTTAGTTGAGCTAACTCATGTACATTCAAACGAGAGTAATATGAGGACTGGGGATCCACGTGACACGAGGCAGAATTCGTCAAAGCCTCAATGTCAAAGTTCGGAATCCAGTGGACAGAACTTGGGATGCAACTATCCTACAAGCCAAGGAGAATCACATTCGAAGAACGTTCCGAGTAAAAGATCTCTTGAAGGGTTACGCATTTTGCTTGCAGAAGATACACCGGTTCTCCAAAGAGTAACGACGATAATGCTTGAAAAGATGGGAGCCGTGGCCATTGCTGTCGGAGACGGACTGCAGGCTGTAGAAGCTATAACTGCCATGCTCAGTGCTGAAGAGCAAAGAAGGGAATGCCCCGCAAGATATGACTTGATATTAATGGACTGCCAAATGCCAAGGATGGATGGCTATGAAGCAACAAAGGCTATTAGAAAGCTAGAAGCGGGATCGAGGCTTCACGTTCCGATTGTAGCATTGACAGCCCACGCAATGTCATCTGATGAAGCCAAATGCTTGGAGGTCGGAATGGATGCATACCTAACAAAGCCAATCGACTATAAGCTGATGGTATCCACCATACTTTCCCTCGCTCAAAGAAGAGGCTAA 3666 43.18 MAEEDTLSEISESSSSSSALTSPMSTPLRKVFCRISGLASSLRRNTAPHSRRIFHRDVEQQEFQYANSHCLSSYYSVFVARLAIMVMLAILIGLLTVLTWHFTKSYTAESLHSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPTNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHTSNNTFYIYSDLTNYTISATESHNINRLSSGEGWSEPHIHGNMSAKWYREPLDPISGQKIGKAKQIPPEDLISIAGISQLADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTSLYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSSGPKLTMAVDSQDDVIRLGAERLQKTYGNNFPPGHEVHEENVKLGDQQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAVKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDVFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTSGHIILRGWCEMSNNLNDVGNFCTDRKKSRFPNWTKMKQQGDHTKNEKDNKMTLWFELDDTGCGMDPRKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSMDNHCQLDFTQHNAVVLLALRGSMSRLIMSQWLRKIGLLTLEASEWNELTLILQELFQARSSETKKGFSPQDSLGEPLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIILNNKPLYKAKMVHILEAAMKDRNLELQKKSASRIASKEGNYHECLEIDSTQFETASSDDSDISELSNCNSQCAKFQVKDTLEEPIAKPCQSPFSPVNHSLVELTHVHSNESNMRTGDPRDTRQNSSKPQCQSSESSGQNLGCNYPTSQGESHSKNVPSKRSLEGLRILLAEDTPVLQRVTTIMLEKMGAVAIAVGDGLQAVEAITAMLSAEEQRRECPARYDLILMDCQMPRMDGYEATKAIRKLEAGSRLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLAQRRG 1221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 631204 636651 + CmaCh06G001200.1 Cma06g00120 295674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00120 1221 CDD REC_hyHK_CKI1_RcsC-like 1088 1213 - -
Cma06g00120 1221 Gene3D - 574 770 IPR036890 -
Cma06g00120 1221 PRINTS Bacterial sensor protein C-terminal signature 694 708 IPR004358 GO:0016310|GO:0016772
Cma06g00120 1221 PRINTS Bacterial sensor protein C-terminal signature 712 722 IPR004358 GO:0016310|GO:0016772
Cma06g00120 1221 PRINTS Bacterial sensor protein C-terminal signature 729 747 IPR004358 GO:0016310|GO:0016772
Cma06g00120 1221 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 767 IPR003594 -
Cma06g00120 1221 PANTHER OSMOSENSOR HISTIDINE KINASE 24 1218 - -
Cma06g00120 1221 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 561 765 IPR036890 -
Cma06g00120 1221 MobiDBLite consensus disorder prediction 7 23 - -
Cma06g00120 1221 MobiDBLite consensus disorder prediction 1 23 - -
Cma06g00120 1221 MobiDBLite consensus disorder prediction 1029 1079 - -
Cma06g00120 1221 SUPERFAMILY CheY-like 1084 1219 IPR011006 -
Cma06g00120 1221 Gene3D - 494 573 - -
Cma06g00120 1221 Pfam His Kinase A (phospho-acceptor) domain 507 572 IPR003661 GO:0000155|GO:0007165
Cma06g00120 1221 SMART HisKA_10 506 572 IPR003661 GO:0000155|GO:0007165
Cma06g00120 1221 SMART REC_2 1086 1213 IPR001789 GO:0000160
Cma06g00120 1221 Pfam Response regulator receiver domain 1088 1211 IPR001789 GO:0000160
Cma06g00120 1221 SMART HKATPase_4 619 769 IPR003594 -
Cma06g00120 1221 ProSiteProfiles Histidine kinase domain profile. 513 769 IPR005467 -
Cma06g00120 1221 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 1218 - -
Cma06g00120 1221 CDD HisKA 507 568 IPR003661 GO:0000155|GO:0007165
Cma06g00120 1221 MobiDBLite consensus disorder prediction 1043 1076 - -
Cma06g00120 1221 ProSiteProfiles Response regulatory domain profile. 1087 1217 IPR001789 GO:0000160
Cma06g00120 1221 Gene3D - 1065 1218 - -
Cma06g00120 1221 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 573 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00120 Cma-Chr6:631204 Cma20g00673 Cma-Chr20:3087195 2.63E-15 dispersed
Cma12g01027 Cma-Chr12:8166633 Cma06g00120 Cma-Chr6:631204 3.33E-13 transposed
Cma16g01243 Cma-Chr16:9398969 Cma06g00120 Cma-Chr6:631204 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35142 PF02518 HATPase_c 8.30E-23 CL0025 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00120 - - csv:101217761 2143.24