Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00132 ATGTTATCAAGTTTGATGAACTTCCTGAGGGCCTGCTGGCAGCCATGTGCTGATCGGCAGGCACGTCGGGGCCGTGGTTCTGATTCAGCTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGCCACCATATCAATGGAGAGTTTTCAATGGCTGTTGTTCAGGCCAACAATTTACTTGAGGATCAGAGCCAGCTTGAGTCTGGCCCCTTGAGCTTGCTCGAGTCGGGACCTTATGGAACCTTTGTTGGAATATACGATGGCCATGGTGGCCCTGAGACATCGCGATTCATATGTGCTAACTTGTTCCAGCATCTCAAAGTGTTTGCCACAGAAGAAAAGGCAATGTCAGCAAATGTAATAAAGAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCTATTGTCACCAAGCAATGGCCTATGAACCCCCAGATTGCGGCTGTTGGTTCTTGCTGTCTGGTTGGAGTGATTTGTGACGGGAAACTCTACGTTGCGAACCTAGGTGATTCCCGTGCCGTGTTGGGAAGGCTTGTTCAGTCCACTGGAGAAGTTCTTCCGATTCAGCTATCATCAGAGCACAATGCAAGTATACCATCAGTCCGCCAGGAGATGCAGTCTTCGCACCCCGATGACCCCCATATTGTGGTGTTGAAGCATAATGTATGGCGTGTAAAGGGCTTGATTCAGATTTCTCGGTCAATTGGAGACGTATATCTCAAAAAGCCAGAATTCAACCGGGAGCCATTGTATGCCAAGTTTCGCCTCCAAGAACCGTTCAGTAGGCCTATTCTGAGCTCAGAACCAGCAATCTCTGTGCACGAACTCGATCCGAACGATCAATTCCTCATATTTGCTTCTGATGGGCTATGGGAGCACCTTAGCAACCAGGAAGCAGTTGATATTGTTCACAAGCATCCTCACAGTGGAAGTGCAAGGAGGTTGGTGAAAGCAGCAATGCAGGAAGCAGCTAAGAAAAGAGAAATGCGGTACTCGGACTTGAAGAAGATCGACCGTGGGGTTCGGCGTCATTTTCATGACGACACAACGGTGATAGTTGTGTTTCTGGGTTCGAGTGGTTCAGGAGGAAGGAGCCCTGTTTTGTCAGTGAGAGGGGGAGGGGTGAACCTATCTGCAAAGGCTGTAGCAGCTTCTAAGCTCAACGCTACTCCCCAATGA 1182 49.24 MLSSLMNFLRACWQPCADRQARRGRGSDSAGCQDGLLWYKDHGHHINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFVGIYDGHGGPETSRFICANLFQHLKVFATEEKAMSANVIKKAFQATEEGFLSIVTKQWPMNPQIAAVGSCCLVGVICDGKLYVANLGDSRAVLGRLVQSTGEVLPIQLSSEHNASIPSVRQEMQSSHPDDPHIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYAKFRLQEPFSRPILSSEPAISVHELDPNDQFLIFASDGLWEHLSNQEAVDIVHKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGSSGSGGRSPVLSVRGGGVNLSAKAVAASKLNATPQ 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 683929 685897 + CmaCh06G001320.1 Cma06g00132 295686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00132 393 Pfam Protein phosphatase 2C 82 326 IPR001932 -
Cma06g00132 393 SUPERFAMILY PP2C-like 61 358 IPR036457 -
Cma06g00132 393 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Cma06g00132 393 Gene3D - 39 361 IPR036457 -
Cma06g00132 393 PANTHER ALPHABET, ISOFORM E-RELATED 6 384 - -
Cma06g00132 393 SMART PP2C_4 41 355 IPR001932 -
Cma06g00132 393 ProSiteProfiles PPM-type phosphatase domain profile. 49 357 IPR001932 -
Cma06g00132 393 PANTHER PROTEIN PHOSPHATASE 2C 28-RELATED 6 384 - -
Cma06g00132 393 CDD PP2Cc 81 357 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01230 Cma-Chr4:6275107 Cma06g00132 Cma-Chr6:683929 1.45E-164 dispersed
Cma06g00132 Cma-Chr6:683929 Cma07g00403 Cma-Chr7:1743228 0 dispersed
Cma14g00416 Cma-Chr14:1953999 Cma06g00132 Cma-Chr6:683929 7.79E-148 dispersed
Cma16g01252 Cma-Chr16:9468656 Cma06g00132 Cma-Chr6:683929 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00132 K01102 - csv:101220137 697.967