Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00134 | ATGCGGTTGTTTTCCGTCTTCTCCTTCTTAAGATCCAAGTTTTTTTGCCCTTTCTTTGAATTCCCCAATTCTTGTTTCTTTTCGATTCTCCATTTTCGACCAACCTTTTTGATTTCCATGGATTTCATAGCCAATCCTTTTCGGCTTTCTTCTTCCTCTTCGCCTTCGTTTGGGAATCTCTTTGAGAGAGTTCGAGAAATTTGCTGCTATGCGGTTTATGCGATTCTTGGCAACATTTTGTCTGCGATCTTCACTTTCTTCTTCGCCCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTAATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGTGCTGTTTTTTCAATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGAATAGGTTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGTCGACTAGTTCGAGAACGGATCGGTCCAGCCATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTGCAGAGACAAGCTTTGACGACATCTCGAACATCTTCGACACCGGCAGCTCGAAAGGACTGCCTGGGGACCTGGTTGAGAAAATTCCCAAGATCATGGTGTCTAAGAACAACAGTGTAGATGCTTATGGAGAAAAAGTCGGTTGTTCCGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGTCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTATTACTCATGGTTCTTGCCCTTTATGCAGAAGGGATCTGTAA | 825 | 43.88 | MRLFSVFSFLRSKFFCPFFEFPNSCFFSILHFRPTFLISMDFIANPFRLSSSSSPSFGNLFERVREICCYAVYAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGAAETSFDDISNIFDTGSSKGLPGDLVEKIPKIMVSKNNSVDAYGEKVGCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLITHGSCPLCRRDL | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 688196 | 690064 | - | CmaCh06G001340.1 | Cma06g00134 | 295688 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00134 | 274 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 1 | 47 | 274 | - | - | |
Cma06g00134 | 274 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 274 | IPR013083 | - | |
Cma06g00134 | 274 | SMART | ring_2 | 229 | 270 | IPR001841 | - | |
Cma06g00134 | 274 | Pfam | Ring finger domain | 229 | 271 | IPR001841 | - | |
Cma06g00134 | 274 | ProSiteProfiles | Zinc finger RING-type profile. | 229 | 271 | IPR001841 | - | |
Cma06g00134 | 274 | SUPERFAMILY | RING/U-box | 221 | 274 | - | - | |
Cma06g00134 | 274 | CDD | RING-H2_PA-TM-RING | 229 | 271 | - | - | |
Cma06g00134 | 274 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 47 | 274 | IPR044523 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00134 | Cma-Chr6:688196 | Cma14g01924 | Cma-Chr14:13565063 | 4.52E-16 | dispersed | |
Cma09g00954 | Cma-Chr9:4795337 | Cma06g00134 | Cma-Chr6:688196 | 2.47E-17 | dispersed | |
Cma16g01253 | Cma-Chr16:9472729 | Cma06g00134 | Cma-Chr6:688196 | 4.64E-158 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00134 | - | - | cmax:111470226 | 548.895 |