Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00134 ATGCGGTTGTTTTCCGTCTTCTCCTTCTTAAGATCCAAGTTTTTTTGCCCTTTCTTTGAATTCCCCAATTCTTGTTTCTTTTCGATTCTCCATTTTCGACCAACCTTTTTGATTTCCATGGATTTCATAGCCAATCCTTTTCGGCTTTCTTCTTCCTCTTCGCCTTCGTTTGGGAATCTCTTTGAGAGAGTTCGAGAAATTTGCTGCTATGCGGTTTATGCGATTCTTGGCAACATTTTGTCTGCGATCTTCACTTTCTTCTTCGCCCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTAATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGTGCTGTTTTTTCAATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGAATAGGTTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGTCGACTAGTTCGAGAACGGATCGGTCCAGCCATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTGCAGAGACAAGCTTTGACGACATCTCGAACATCTTCGACACCGGCAGCTCGAAAGGACTGCCTGGGGACCTGGTTGAGAAAATTCCCAAGATCATGGTGTCTAAGAACAACAGTGTAGATGCTTATGGAGAAAAAGTCGGTTGTTCCGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGTCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTATTACTCATGGTTCTTGCCCTTTATGCAGAAGGGATCTGTAA 825 43.88 MRLFSVFSFLRSKFFCPFFEFPNSCFFSILHFRPTFLISMDFIANPFRLSSSSSPSFGNLFERVREICCYAVYAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGAAETSFDDISNIFDTGSSKGLPGDLVEKIPKIMVSKNNSVDAYGEKVGCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLITHGSCPLCRRDL 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 688196 690064 - CmaCh06G001340.1 Cma06g00134 295688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00134 274 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 47 274 - -
Cma06g00134 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 274 IPR013083 -
Cma06g00134 274 SMART ring_2 229 270 IPR001841 -
Cma06g00134 274 Pfam Ring finger domain 229 271 IPR001841 -
Cma06g00134 274 ProSiteProfiles Zinc finger RING-type profile. 229 271 IPR001841 -
Cma06g00134 274 SUPERFAMILY RING/U-box 221 274 - -
Cma06g00134 274 CDD RING-H2_PA-TM-RING 229 271 - -
Cma06g00134 274 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 47 274 IPR044523 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00134 Cma-Chr6:688196 Cma14g01924 Cma-Chr14:13565063 4.52E-16 dispersed
Cma09g00954 Cma-Chr9:4795337 Cma06g00134 Cma-Chr6:688196 2.47E-17 dispersed
Cma16g01253 Cma-Chr16:9472729 Cma06g00134 Cma-Chr6:688196 4.64E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00134 - - cmax:111470226 548.895