Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00150 ATGATGGATCCTTACCACCACCACCACCAGAACCCTCCTCTTCGCGACGATCATCTCCGTTACCTTACCGGAACCACCGCTGGCGCCCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTTACTGCTCACCAGGATCTCAAAGGAATGAGGTTGGGTAGTGTGTACTATGAGCCATTGATGGCATCTTCCAGCCACAAAATTACTTCTAGACAGCGATGGACTCCGTTGCCCGTGCAACTTCAGATCTTGGAGCGTATATTCGAGCAAGGGAATGGAACTCCTAGCAAGCAAAAGATCAAAGAGATTACCTCTGAACTGGGGCAACATGGGCAAATTTCTGAATCAAATGTCTATAATTGGTTCCAAAACAGGCGTGCTCGATCAAAGAGGAAGCAGCAGGGTACAGCGCCTGCCTATGGTGAATCAGAATTGGAGACAGAAGTTGAGTCGCCAAAAGATAAGAAGACAAAACCTGTGGATTTTCAAACTCCTCAAACCTCTGCACCTTTGGGGGAGGACGTGGGCTTCCAGAGTCCTGAGATGCACTATGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCATCAAATGGAAGTTCAAAAACCGCAAGAAGTTTTAGTCAGATGTCTTCTTATGAGGCAGGGAATGAACAGCTGACAGGAAAGATCGAGACACCAGAAAACTATAGTCTTTACTCGCAAGCAGAAGGATGCATGACCGAACAACCCTGA 819 47.25 MMDPYHHHHQNPPLRDDHLRYLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLKGMRLGSVYYEPLMASSSHKITSRQRWTPLPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQGTAPAYGESELETEVESPKDKKTKPVDFQTPQTSAPLGEDVGFQSPEMHYELHFLDPNTNKADTLFPSNGSSKTARSFSQMSSYEAGNEQLTGKIETPENYSLYSQAEGCMTEQP 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 751766 754426 - CmaCh06G001500.1 Cma06g00150 295704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00150 272 MobiDBLite consensus disorder prediction 169 183 - -
Cma06g00150 272 CDD homeodomain 94 156 IPR001356 GO:0003677
Cma06g00150 272 Gene3D - 94 160 - -
Cma06g00150 272 Pfam Homeodomain 94 154 IPR001356 GO:0003677
Cma06g00150 272 ProSiteProfiles 'Homeobox' domain profile. 90 155 IPR001356 GO:0003677
Cma06g00150 272 PANTHER WUSCHEL-RELATED HOMEOBOX 13 23 266 IPR044559 GO:0003700
Cma06g00150 272 MobiDBLite consensus disorder prediction 221 240 - -
Cma06g00150 272 PANTHER - 23 266 - -
Cma06g00150 272 SMART HOX_1 92 159 IPR001356 GO:0003677
Cma06g00150 272 MobiDBLite consensus disorder prediction 151 193 - -
Cma06g00150 272 SUPERFAMILY Homeodomain-like 92 157 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02023 Cma-Chr1:12923752 Cma06g00150 Cma-Chr6:751766 4.40E-93 dispersed
Cma06g00150 Cma-Chr6:751766 Cma09g00047 Cma-Chr9:205924 7.77E-92 dispersed
Cma16g01272 Cma-Chr16:9689343 Cma06g00150 Cma-Chr6:751766 1.58E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35143 PF00046 Homeodomain 1.90E-17 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00150 - - csv:101203410 481.485