Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g00169 | ATGACTCGTTATTTGCAAGCTTTGGCGGGGAATACTTCCTCGGCGACGGCGACAGCGACGGCGCCGCCCCCAGAGGCGGTGGCTATAGAGTCGGACTTCGTGGTGATTCTGGCGGCGCTACTGTGTGCTCTAATTTGTATGGTGGGGCTGATAGCGGTGGCTCGGTGCGCGTGGCTCCGGCGTGGCAGTAACGGTGGCGGTGCAGGAAATCAGGCGTCAGCGAACAGGGGATTGAAGAAGAAAATCCTGCAATCCCTTCCGAAATTCGCGTACAGAGCATCGGGGTCGGGCGGAGAAGGGAAATTCGCGGCGGAATGTGCGATCTGCCTGGCGGAATTCCTAGACGGGGAGGAGATCCGACAACTGCCGCAGTGTGGCCATTGCTTCCACGTCAGCTGCGTAGACACGTGGCTGAGCTCCCACTCGTCCTGCCCCTCTTGCCGCCAGATTCTGGTAGTGGCCAGATGCCAGAAGTGCGGCGATTTCCCGGCCGTCGTCCACGGCGACGATCACAACAACGAGGAGGAGCAAAAGAGGAGGGAAGATAACAATGGTAACAACAGGGGTTTGGGATTTTTGCCTTGA | 585 | 58.8 | MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLRRGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHNNEEEQKRREDNNGNNRGLGFLP | 194 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 839443 | 840027 | + | CmaCh06G001690.1 | Cma06g00169 | 295723 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g00169 | 194 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED | 1 | 180 | - | - | |
| Cma06g00169 | 194 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 152 | IPR013083 | - | |
| Cma06g00169 | 194 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 148 | IPR001841 | - | |
| Cma06g00169 | 194 | SMART | FANCL_C_2 | 102 | 156 | - | - | |
| Cma06g00169 | 194 | SMART | ring_2 | 106 | 147 | IPR001841 | - | |
| Cma06g00169 | 194 | MobiDBLite | consensus disorder prediction | 170 | 185 | - | - | |
| Cma06g00169 | 194 | Pfam | Ring finger domain | 105 | 148 | IPR001841 | - | |
| Cma06g00169 | 194 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 1 | 180 | - | - | |
| Cma06g00169 | 194 | SUPERFAMILY | RING/U-box | 105 | 154 | - | - | |
| Cma06g00169 | 194 | MobiDBLite | consensus disorder prediction | 170 | 194 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g00169 | Cma-Chr6:839443 | Cma15g00166 | Cma-Chr15:766095 | 1.20E-34 | dispersed | |
| Cma14g00159 | Cma-Chr14:651425 | Cma06g00169 | Cma-Chr6:839443 | 3.02E-19 | dispersed | |
| Cma06g00169 | Cma-Chr6:839443 | Cma09g00033 | Cma-Chr9:151504 | 3.42E-57 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g00169 | - | - | cmax:111470152 | 363.999 |