Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00173 ATGACCTTTGACATGGCTCAGAGTGCTAGGACAATGAGTTCTTCCTTTAACTCCAGCAGTGGCAACGATGATGCTCTTCTACAAAGCTTTGCTGCTGCTTCAAATGGGGATGATTATGATAGTGATGGCTCCAACTTTGCACCCCCTACTCCTACAACCATATCGATGGCGATTCCAGCCGAACTTGCTGGGGTCATACCTTTGATTGATAAATTCCAGGTCGAAGGATTCTTAAGGATGATGCATAAACAGATACATTCTTCTGGAAAACGTGGATTCTTTTCCAAACGATCTGTCGGTCCTCAAGTTCGGGAAAAATTCACATTTGAAGATATGTTGCAATATTTGATCAAAGCATGGGAGCTGATGTATCTTTGTGCATCTGCGATGCCTCCTAGCAAGGATATTGGTGGATATCTTTCAGAGTATGTTCATAATGTTGCACAAGGCAGTAGTACTGATTCGGAGGTTCGAGTTTTTGCATTAAATACACTGAATGCTTTAAAGCGTTGCATGAAGGCGGGTCCCAGGCATATAATACCTGGTCGTGAGGAAATTGAAGCTCTTTTAACAGGGCGAAAGCTTACAACCATAGTGTTTTTCTTGGATGAAACTTTTGAAGAAATCACATACGATATGACAACAACAGTGGCTGATTCGGTTGAGGAACTTTCAGGAATTATAAAACTGTCAGCACACTCTAGCTTCAGTCTTTTTGAATGCCGTAAGATTGTCAGTGGGGCTAAAGCACTTGATCTAGGAAATGAATTCAAGGCAGCAAAAGATCGAAGTAAAGGAGAAATTCTGCACTTCAAGCTGACGTTTAAAAAGAAGCTGTTTCGGGAGTCTGACGAAGCAGTTGCAGACCCAATGTTTATACAGCTATCATATCTTCAGCATGACTATTTGTTGGGGAATTATCCTGTTGGAAGGGATGATGCTGCTCAGCTGTCAGCATTACAGATCCTGGTTGAAATTGGGTTTATTAGCAGTCCAGAATCTTGCACTGATTGGAATTCGCTTCTGGAAAGATTCGTTCCCAGACAAATTGCCATAACAAGACCAAAGCGAGAGTGGGAGTTGGATATTCTCTCGCGTTATCGTTCCATGGAGCATCTGACAAAAGATGATGCAAGACAACAGTTTCTTCGAATATTGAGATCGCTTCCCTACGGGAATTCAGTTTTCTTTGGCATCCGCAAGATTGATGATCCCATTGGACTTCTACCTGGGCGAATAATTTTGGGTATCAACAAAAGAGGGGTTCATTTCTTCCGTCCAGTTCCGAAGGAGTATTTACATTCTGCTGAATTAAGAGATATAATGCAGTTCGGCAGCAGTAACACTGCTGTCTTTTTTAAGATGAGAGTTGCTGGTGTCCTACACATTTTCCAGTTTGAGACCAAGCAGGGAGAAGAAATATGCATTGCTTTGCAGACACACATAAATGATGTCATGTTGCGTCGTTACTCTAAAGCTAGAACTGCTGCCGTTGGCTCCATGCTTGGAGATTCTTCCAGCAATTTTAAGGCTCAAAGTGTGGAAGCATATGAGAAACGAGTTCATGAGTTGAGTAAGGGCATTGAAGAGTCTCAGAGAAATGCTGAACAGTTGCTGAAGGAATTGCATGAAAAGAATAAGCAAGAAGTGGTATTGCAAGAAGAAATGGAGACCTTAAAAGAATCCTTGAGATTTGAAAAGCAAAACTTAGCTGAGGCAACACGTAGTCTTGAGAGGCTCAGATCGCAGTATGATGAAAAAAACAAGGAGCACCAGGACATATTAACGGAAAAAAGGAGTATGGAAGCAAGAATAGCCAAGTTGAGCGCCACCGTGCTGGAAAATAATGTGGAAAAAGATACAGTCGGAATTAACGAACAGGTTCTACAAAAACTTCAGGATGAGTTGAGCCTTCGAAATGATGAGTTGCAAGCCACTGAAGAAATCAGAAAGAAACTGATGGAACATCTTAAGAAAAGCTTTGAACATGAACGCAAAGTCTCGAAGCTGAGAGTGGCAGAACTTGAGAAGAAACTTGAAGAAGACATTGACCGAAAAAATGAGCAAACAGCTAATATTTTGAAGATGCAAGGAGCTCAGTTAGCTGAGATGGAAGCGCTTTATAAGGAAGAGCAAATTTTAAGGAAACGCTATTTCAACATGATAGAAGATATGAAAGGAAAAATTCGAGTTTACTGTCGACTTAGGCCTCTTAATGAGAAAGAAATCATTGAAAAAGAAAAGAACGTGCTTAGAAGTCTGGACGAGTTCACAGTTGAACATTCGTGGAAAGATGATAAGCCGAAGCAACATATGTATGATCGTGTATTCGATGGCACTGTCTCCCAGGAAGATTATCTAGTCCAGTCTGCCGTTGATGGCTATAATGTCTGCATATTTGCTTATGGTCAAACTGGTTCTGGTAAGACCTTTACAATATATGGTTCTGAGGAGAACCCTGGATTAACACCTCGTGCCATAGGAGAGCTTTTTAGAATTTTGAAGCGTGATAGTAACAAGTTCTCGTTTTCATTGAAGGCATACATGGTAGAATTATATCAAGACACGTTAGTAGATCTTCTTTTGCCGAAGAATGCAAAACGATCGAGATTAGATATCAAAAAGGATACAAAGGGAATGGTATCCATTGAAAATGTCACAATAGCTTCTATCTCAACGTTTGAAGAATTGAAAAACATTATTTATAGAGGGTCCGAGCAACGACATACTTCCGAGACTCAAATGAACGAAGAAAGTTCAAGATCACATTTGATACTTTCAATTATAATCGAAAGCACCAACCTTCAGACGCAATCCGTTTCTAAAGGAAAGCTTAGTTTTGTTGATCTTGCGGGGTCAGAGAGAGTGAAGAAGTCAGGCTCTTCTGGTAGCCAACTTAAGGAAGCTCAAAGCATAAATAAATCACTTTCAGCACTTGGGGATGTTATCAGTGCTTTGTCTTCTGGGGGTCAGCACATACCTTACAGAAATCATAAGCTAACAATGTTGATGAGCGATTCACTCGGTGGTAACGCTAAAACGCTTATGTTTGTCAACGTCTCTCCAGCTGAATCCAACTTAGACGAGACGTACAATTCTCTCATGTACGCGTCTAGAGTTCGATCAATTGTTAACGATCCAAGCAGAAACGTAGCATCGAAAGAGGTTGCTCGACTGAAAAAACTGGTTGGTTATTGGAAAGAGCAAGCAGGTAAAAGGGGAGAGGTCGACGAGTTGGAAGAAATTCAAGACGAGCGACATTGTAAAGAGAAAGCGGATATCAGATATTCCATGTTCAAGTTTGGCGATTGTTCTCCTTCAAGGAGTGCAGCTCATGCGCGAAAGAAATTTGATACAGACAATGGCGAATTCAGATTTCAGAACCATGTAATTGAACGTTCAAGCGGCTACGAGAAGAAGAGAAACGGCAGCGAATCGGTGAAAGATCAAAGCAGCAATTTCTGTTTCTGGAGCTCGTTCTTGTTTTCCAGAATTCTCCCTTTGGAACCGGAGATGTGTGATGCGATGGAGGAACAGGAATCTGCACAAGATATTCCAGTTGCTTTAGGTGAAGGCAACCAAGTTATTTCTAAAGATGAGCTCCATGATTCTCTCCCTTTGCCAGCTGAGGCAACTCCGAACTCTTGTGAAAATAAGATCGATTCACCTGAAACTCATGTACAGGAAGTCGTACCTCCGGAGGATAATTTAGATAAATCTACGATTCCTCAGCAATCAAATCAAGATTCTGCGAATTCACTTCCCAATCACGACCAAGAATTGGTTAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGGCCTGATGAGTTGCCCCCAAGGGAGTTGGGTCTAGATGCTGCTACTTCCAACACTCACCTGGAAACCGTACATTCCTCCTTGGATGCTGAGGCCTTTGGGATGCCTGAAACTAAAACAGGTTCTCTTGATGATGCTTCAACAGCCAATCATGATGAACCTGTAACTCCCCATCCCGTCTCATCATGTATTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAACGTTGCTACACCTCACAATGGGCATTCAAATACGAATCACTCGTTTATTTTGGATGAAAATCAAATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAATTTCTTCAGAGAAAGAGGCATGGAATTCAAGCCTCCCAAGTTTTATGGAGAAGGACTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGGGGCTATGACAAGGTATTTGTTTATGGGAAGAAACACAGGCTCATACTAACTGAGAGGACATGTACAACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTGTCCTTGATTACGAGAGGCATAAAACCCATGGTGGCGAACTTAGGGTACCTATTGCTTCCAACTCAGAACCTATGAGCATCGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGATAAGAACTCACCTTCAATGCAGAAAAAGGAAAAACAACTCAAAGGCATTGGTGGAATTCTTAAACGTAAGAAACCGTCTTACATGGAGCATACTGTGAAATCAGCACGAACAAAATCATCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCTGATTGGGTCAAGGTCAATGTGCAGAAAACTGTGCGCGTTCAGTCCGATCCAGCAGGACGCTTGGTTATTAGTGGTGAACCTGAACATCCTGATAATCCATGGGGAGTCACGCCCTTTAAAAAGGTCCTTGCCCCTCCCCCTTATTTGAGCCGTAACCAGTCTTCTCAATCCAAATCAATTCATCTCCAGTTCTATGCTCTTTCAAGAATGTTTGGCTCTCATCCGATCGTTTTTGTTAGACAGGCATGGGATACCCATTTCAAGGAGATGAAAAAAGCTCGGTCGCAGAGCAATCAGGACCCCTCAAAAGACCTATGCCTCTCGTTATTTGGGGAAAGGCCAGAATTCATCGAAGGATCAGACCACAGCACATCACCTGGTATTAAATTCAAGCCTTCCCATGGGGGATCAAGAACCGATCTTCTAGCTTTGAATAGTTCCTCCAAAGAATCAAGAGATAACCCATTGGCTTCAGGATTTAAGTTCATTCTGCGTCCTTTTTTCCCTTTTGATCTTTTAGATGAAGGCACTGATACGCTGCGGAAAAGTTCCCCATGA 5295 42.23 MTFDMAQSARTMSSSFNSSSGNDDALLQSFAAASNGDDYDSDGSNFAPPTPTTISMAIPAELAGVIPLIDKFQVEGFLRMMHKQIHSSGKRGFFSKRSVGPQVREKFTFEDMLQYLIKAWELMYLCASAMPPSKDIGGYLSEYVHNVAQGSSTDSEVRVFALNTLNALKRCMKAGPRHIIPGREEIEALLTGRKLTTIVFFLDETFEEITYDMTTTVADSVEELSGIIKLSAHSSFSLFECRKIVSGAKALDLGNEFKAAKDRSKGEILHFKLTFKKKLFRESDEAVADPMFIQLSYLQHDYLLGNYPVGRDDAAQLSALQILVEIGFISSPESCTDWNSLLERFVPRQIAITRPKREWELDILSRYRSMEHLTKDDARQQFLRILRSLPYGNSVFFGIRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICIALQTHINDVMLRRYSKARTAAVGSMLGDSSSNFKAQSVEAYEKRVHELSKGIEESQRNAEQLLKELHEKNKQEVVLQEEMETLKESLRFEKQNLAEATRSLERLRSQYDEKNKEHQDILTEKRSMEARIAKLSATVLENNVEKDTVGINEQVLQKLQDELSLRNDELQATEEIRKKLMEHLKKSFEHERKVSKLRVAELEKKLEEDIDRKNEQTANILKMQGAQLAEMEALYKEEQILRKRYFNMIEDMKGKIRVYCRLRPLNEKEIIEKEKNVLRSLDEFTVEHSWKDDKPKQHMYDRVFDGTVSQEDYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEENPGLTPRAIGELFRILKRDSNKFSFSLKAYMVELYQDTLVDLLLPKNAKRSRLDIKKDTKGMVSIENVTIASISTFEELKNIIYRGSEQRHTSETQMNEESSRSHLILSIIIESTNLQTQSVSKGKLSFVDLAGSERVKKSGSSGSQLKEAQSINKSLSALGDVISALSSGGQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLMYASRVRSIVNDPSRNVASKEVARLKKLVGYWKEQAGKRGEVDELEEIQDERHCKEKADIRYSMFKFGDCSPSRSAAHARKKFDTDNGEFRFQNHVIERSSGYEKKRNGSESVKDQSSNFCFWSSFLFSRILPLEPEMCDAMEEQESAQDIPVALGEGNQVISKDELHDSLPLPAEATPNSCENKIDSPETHVQEVVPPEDNLDKSTIPQQSNQDSANSLPNHDQELVKPDAEPASDVKTGPDELPPRELGLDAATSNTHLETVHSSLDAEAFGMPETKTGSLDDASTANHDEPVTPHPVSSCIKAETENAIELKVNEDNVATPHNGHSNTNHSFILDENQIAEGSESGTEEEQSAFMKELENFFRERGMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVFVYGKKHRLILTERTCTTVSWTFRGFYEKAVLDYERHKTHGGELRVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEDKNSPSMQKKEKQLKGIGGILKRKKPSYMEHTVKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVLAPPPYLSRNQSSQSKSIHLQFYALSRMFGSHPIVFVRQAWDTHFKEMKKARSQSNQDPSKDLCLSLFGERPEFIEGSDHSTSPGIKFKPSHGGSRTDLLALNSSSKESRDNPLASGFKFILRPFFPFDLLDEGTDTLRKSSP 1764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 852031 873210 - CmaCh06G001730.1 Cma06g00173 295727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00173 1764 Gene3D - 194 281 - -
Cma06g00173 1764 CDD ARID 1390 1469 - -
Cma06g00173 1764 Coils Coil 658 692 - -
Cma06g00173 1764 MobiDBLite consensus disorder prediction 1234 1285 - -
Cma06g00173 1764 ProSiteProfiles ARID domain profile. 1385 1473 IPR001606 GO:0003677
Cma06g00173 1764 MobiDBLite consensus disorder prediction 1238 1257 - -
Cma06g00173 1764 Pfam FERM central domain 284 396 IPR019748 -
Cma06g00173 1764 MobiDBLite consensus disorder prediction 1302 1334 - -
Cma06g00173 1764 Pfam ARID/BRIGHT DNA binding domain 1388 1469 IPR001606 GO:0003677
Cma06g00173 1764 Gene3D - 290 389 IPR014352 -
Cma06g00173 1764 Gene3D - 1046 1094 - -
Cma06g00173 1764 Gene3D Kinesin motor domain 715 1045 IPR036961 -
Cma06g00173 1764 Gene3D MyTH4 domain 101 192 IPR038185 -
Cma06g00173 1764 CDD KISc_C_terminal 726 1045 - -
Cma06g00173 1764 CDD FERM_C_KCBP 393 499 - -
Cma06g00173 1764 PANTHER KINESIN-LIKE PROTEIN KLP-3 102 1072 - -
Cma06g00173 1764 Pfam MyTH4 domain 115 188 IPR000857 GO:0005856
Cma06g00173 1764 SMART B41_5 191 396 IPR019749 -
Cma06g00173 1764 ProSiteProfiles MyTH4 domain profile. 1 190 IPR000857 GO:0005856
Cma06g00173 1764 SUPERFAMILY PH domain-like 396 484 - -
Cma06g00173 1764 Gene3D - 394 501 IPR011993 -
Cma06g00173 1764 Pfam Kinesin motor domain 734 1043 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma06g00173 1764 SUPERFAMILY ARID-like 1380 1483 IPR036431 GO:0003677
Cma06g00173 1764 SMART kinesin_4 726 1051 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma06g00173 1764 SMART ARID_2 1382 1469 - -
Cma06g00173 1764 MobiDBLite consensus disorder prediction 1260 1280 - -
Cma06g00173 1764 Coils Coil 629 649 - -
Cma06g00173 1764 PRINTS Kinesin heavy chain signature 993 1014 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma06g00173 1764 PRINTS Kinesin heavy chain signature 794 815 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma06g00173 1764 PRINTS Kinesin heavy chain signature 944 962 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma06g00173 1764 PRINTS Kinesin heavy chain signature 913 930 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma06g00173 1764 Coils Coil 514 604 - -
Cma06g00173 1764 MobiDBLite consensus disorder prediction 1487 1535 - -
Cma06g00173 1764 ProSitePatterns Kinesin motor domain signature. 943 954 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cma06g00173 1764 SUPERFAMILY Prismane protein-like 677 751 IPR011254 GO:0003824|GO:0016491
Cma06g00173 1764 ProSiteProfiles Kinesin motor domain profile. 728 1043 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma06g00173 1764 ProSiteProfiles FERM domain profile. 195 490 IPR000299 GO:0005856
Cma06g00173 1764 SUPERFAMILY Second domain of FERM 276 391 IPR035963 -
Cma06g00173 1764 SMART bright_3 1386 1474 IPR001606 GO:0003677
Cma06g00173 1764 CDD FERM_B-lobe 293 389 IPR019748 -
Cma06g00173 1764 Gene3D - 1369 1485 IPR036431 GO:0003677
Cma06g00173 1764 PANTHER KINESIN-LIKE PROTEIN 102 1072 - -
Cma06g00173 1764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 728 1072 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02043 Cma-Chr1:12993973 Cma06g00173 Cma-Chr6:852031 8.40E-77 dispersed
Cma06g00173 Cma-Chr6:852031 Cma05g01136 Cma-Chr5:8883021 2.13E-79 dispersed
Cma16g01291 Cma-Chr16:9774416 Cma06g00173 Cma-Chr6:852031 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35146 PF00225 Kinesin 1.50E-99 CL0023 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00173 - - csv:101206704 1709.89