Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00175 ATGGCCAAACTAACCAAAACCCACCTCAAATTTTGGCTGTTTATGCTGCTGATTCTCTTTCCCTTGGCTCCGGCGGCGGATCTTGAACAAACAGAGTGCTTAAAAGTCCCCTCGTCGGAGTTCTCCAACTCTGTTCTCTCCACCATCGGCGTCGTGCGCCAGGTCATGCTCATTTTCTCTCCATTCACTAAATTTCTCGGTGATTCCCGCCTTTCCACCGCCATTTCCGACTGTCTCGATTTGCTGGATTCTTCTTCCGACCAGTTGAGCTGGTCGCTCTCCGCCGCCCAAAACCCAAAGGCTAAGAACAACAGCACCGGAGATCTGAGTTCTGATCTGAAAACATGGCTGAGCGCTGCCGGAGTTAACCCAGAAACATGCATGGAAGGATTCGAAGGCACCAATAGCATTGTCAAAGGATTAGTCTCCGAAGGCATCAACCAATTAACTTCACAGGTTTATAACCTTCTTTCCATGGTGAAATCGATCTCCAATCAGCCGGCCGGAAAAGGGGAGAGCGGGTTTCCTGCCTGGCTCAAATCGGAGGAACAGAGCCTGCTTCAACAGAATGACTTCGCCGCCGATGCGACTGTGGCCGCCGATGGGACAGGGGATTTCACCACCGTAATGGAGGCGGTGCTGGCAGCCCCCGACAAGAGCATGCGGCGGTATGTGATATACGTGAAAAAGGGTGTGTATTTCGAGAACGTTGAGATCAAGAAGAAGAAATGGAATATCATGATGATCGGAGATGGCATTGACGCCACCGTCATATCCGGTAACCGGAGCTTCATTGACGGGTGGACGACGTTCCGGTCAGCCACCTTCGCGGTTAGTGGAAGAAGAGGGTTCATAGCACGAGACATAACGTTCGAGAACACGGCAGGACCAGAGAAGCATCAAGCCGTGGCACTTAGGTCCGACTCGGACCTGTCAGTGTTCTTCAGGTGCCGTATGAGTGGCTACCAAGACACGCTATACACGCACACCATGCGCCAATTCTATCGCGAGTGCCACATCAGCGGCACGGTCGACTTTCTCTTCGGTGACGCCACCGTGGTCTTCCAAAACTGCACCATCCTAGCCAAGAAGGGTCTTCCCAACCAGAAAAACACCATCACTGCCCAAGGCCGGAAGGACCCGAATCAGCCCACCGGCTTCTCCATTCAATTCTGCAACATCTCCGCCGATTCCGACCTGCAGCCATCAGTTAACACCACTGCAACATACCTCGGGAGGCCATGGAAGGAATACTCAAGAACCATTATCATGCAGTCGTACATGAGCAATGCCATTAGGCCAGAAGGCTGGCTCGAGTGGAATGGCGATTTTGCTTTGAATACTTTGTTTTACGCCGAGTTTATGAATTATGGACCGGGGGCCGGGTTGGCTAAGCGCATCAACTGGCCGGGTTACCACCGGCTGAACCAAACCAGTGAGGCTACTAACTTCACCGTGTCTCAGTTCATTGAGGGGAACCTGTGGCTGCCGTCCACTGGTGTCAAGTTCACCTCAGGATTTGGAGCCAATTAA 1533 52.38 MAKLTKTHLKFWLFMLLILFPLAPAADLEQTECLKVPSSEFSNSVLSTIGVVRQVMLIFSPFTKFLGDSRLSTAISDCLDLLDSSSDQLSWSLSAAQNPKAKNNSTGDLSSDLKTWLSAAGVNPETCMEGFEGTNSIVKGLVSEGINQLTSQVYNLLSMVKSISNQPAGKGESGFPAWLKSEEQSLLQQNDFAADATVAADGTGDFTTVMEAVLAAPDKSMRRYVIYVKKGVYFENVEIKKKKWNIMMIGDGIDATVISGNRSFIDGWTTFRSATFAVSGRRGFIARDITFENTAGPEKHQAVALRSDSDLSVFFRCRMSGYQDTLYTHTMRQFYRECHISGTVDFLFGDATVVFQNCTILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLQPSVNTTATYLGRPWKEYSRTIIMQSYMSNAIRPEGWLEWNGDFALNTLFYAEFMNYGPGAGLAKRINWPGYHRLNQTSEATNFTVSQFIEGNLWLPSTGVKFTSGFGAN 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 875934 878599 - CmaCh06G001750.1 Cma06g00175 295729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00175 510 Gene3D - 189 507 IPR012334 -
Cma06g00175 510 CDD PMEI-like_4 7 164 - -
Cma06g00175 510 SUPERFAMILY Pectin lyase-like 193 506 IPR011050 -
Cma06g00175 510 SMART PMEI_2 24 163 IPR006501 GO:0004857
Cma06g00175 510 Pfam Plant invertase/pectin methylesterase inhibitor 73 158 IPR006501 GO:0004857
Cma06g00175 510 PANTHER PECTINESTERASE 34 165 - -
Cma06g00175 510 PANTHER PECTINESTERASE 171 507 - -
Cma06g00175 510 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 34 165 - -
Cma06g00175 510 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 171 507 - -
Cma06g00175 510 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 164 IPR035513 -
Cma06g00175 510 Pfam Pectinesterase 195 493 IPR000070 GO:0030599|GO:0042545
Cma06g00175 510 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 166 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00175 Cma-Chr6:875934 Cma17g01067 Cma-Chr17:7630092 3.39E-152 dispersed
Cma06g00175 Cma-Chr6:875934 Cma10g01132 Cma-Chr10:7805763 2.77E-154 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00175 K01051 - csv:101207185 850.506