Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00178 ATGAAAGTGTTGTGGAGCAGCAATTCCATCTCTCCCAGGACGTCTGCCATTGCTACTGTCACTTCAGCACAACACCCGAGCCTACCGCCGTCAGCACTGCTGCTTCACAGTCCCAGTCAAACTAGTCGAGTCGGAATGGGGAACTGCGGTACCAGAGAAGAGTCTGCTGTTGTTTCCAATGCTCAAGTTCAACAGTTGCATACGTTATCGTCTTCATTGGCTGTGAAAAACGGCAGCAACAATGCTACAGATAAAAAGCATATTCATAACCGGTCCATATCAGATCTAAGCGATCCTTCAACCCCTCGCAGCCTCGAGGATTTGAGAAAGAATTCGGTGCTTTACACACACATTATTGCCTTCACATTGTTCGAGCTGGAAACTATCACCAAGAGTTTCCGTTCCGATTACATTCTGGGAGAGGGCGGATTTGGAACTGTTTATAAAGGCTACATTGACGAGAACGTCAGGGTTGGCCTCAAATCTCTTCCTGTTGCTGTCAAGGTTCTCAATAAGGAAGGCCTCCAGGGACATCGAGAATGGCTTACAGAAGTCAACTTTCTTGGTCAGCTAAGACACCCAAACCTTGTAAAGCTGATTGGTTACTGCTGCGAGGATGACCACAGATTACTTGTCTACGAGTTCATGTTTAGAGGAAGCCTTGAAAACCACCTCTTTCGAAAGACAACTGTTCCATTGCCATGGGCAAGAAGAATGATGATAGCTCTTGGAGCAGCCAAGGGTCTTGCTTTCCTACACAATGCTGAAAGGCCCGTTATCTATCGGGATTTTAAAACCTCTAATATACTGTTGGACTCTGACTATACAGCCAAGCTTTCTGATTTTGGGCTTGCGAAAGCTGGACCTCAAGGTGATGAGACACATGTTTCAACTCGAGTAATGGGTACTTATGGTTATGCTGCCCCCGAATATGTCATGACTGGTCACTTGACAGCAAGGAGTGATGTATACAGCTTTGGTGTTGTTCTTCTGGAGCTTTTAACAGGAAGAAAGTCTGTTGACAAGACAAAACCAAGCAAGGAGCAGAATTTGGTAGATTGGGCCCGACCTAAGCTAAATGACAAGAGGAAGTTGCTACAAATAATCGACCCCCGATTAGAAAACCAATATTCGACAAGGGCAGCACAGAAGGCCTGCAGCCTGGCATACTATTGCCTGAGCCAGAACCCCAAAGCAAGACCCTTAATGAGTGATGTGGTCGAAACTTTAGAACCATTACAGAGCAGCAACGGTGCAACTGAATCGGGAAGTAGCCCATTTGTTAGGGGGGGCATCCCTGATTACAGGATGCGGCAAAGGTTCGCCGACAATGTTGGTCCTGGTGGTGCCAATTGCCGGTCTCCTAACCCCACCTGTTCCCCCAGCGTCCCTGCGGCTTGTAGGGTTAGATGA 1413 47.35 MKVLWSSNSISPRTSAIATVTSAQHPSLPPSALLLHSPSQTSRVGMGNCGTREESAVVSNAQVQQLHTLSSSLAVKNGSNNATDKKHIHNRSISDLSDPSTPRSLEDLRKNSVLYTHIIAFTLFELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKTTVPLPWARRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTKPSKEQNLVDWARPKLNDKRKLLQIIDPRLENQYSTRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSNGATESGSSPFVRGGIPDYRMRQRFADNVGPGGANCRSPNPTCSPSVPAACRVR 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 910040 917798 - CmaCh06G001780.1 Cma06g00178 295732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00178 470 Pfam Protein tyrosine and serine/threonine kinase 138 410 IPR001245 GO:0004672|GO:0006468
Cma06g00178 470 ProSiteProfiles Protein kinase domain profile. 133 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00178 470 Gene3D Phosphorylase Kinase; domain 1 98 215 - -
Cma06g00178 470 Gene3D Transferase(Phosphotransferase) domain 1 216 425 - -
Cma06g00178 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Cma06g00178 470 ProSitePatterns Protein kinases ATP-binding region signature. 139 168 IPR017441 GO:0005524
Cma06g00178 470 PANTHER OS01G0588500 PROTEIN-RELATED 74 457 - -
Cma06g00178 470 SUPERFAMILY Protein kinase-like (PK-like) 109 411 IPR011009 -
Cma06g00178 470 Coils Coil 468 470 - -
Cma06g00178 470 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL8-RELATED 74 457 - -
Cma06g00178 470 MobiDBLite consensus disorder prediction 75 102 - -
Cma06g00178 470 CDD STKc_IRAK 139 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01428 Cma-Chr5:10559676 Cma06g00178 Cma-Chr6:910040 1.32E-160 dispersed
Cma06g00178 Cma-Chr6:910040 Cma11g00733 Cma-Chr11:3588221 2.68E-160 dispersed
Cma16g00520 Cma-Chr16:2659970 Cma06g00178 Cma-Chr6:910040 1.96E-152 dispersed
Cma05g00734 Cma-Chr5:4148560 Cma06g00178 Cma-Chr6:910040 7.80E-159 transposed
Cma14g00003 Cma-Chr14:8584 Cma06g00178 Cma-Chr6:910040 4.96E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68616 PF07714 PK_Tyr_Ser-Thr 3.80E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00178 - - csv:101220268 801.586