Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00186 ATGATTTTCAAACTATTTCTCCTTCTTCTCTTAGCTCCTGCTGCTGTTCATTGTTTAGACACTGTTTTCAACGATGATGTTCTTGGGTTGATAGTCTTCAAAGCTGGCCTTCAAGATCCCTTGGGTAAACTCATATCATGGAATGAAGAAGATGATACTCCCTGCAATTGGTTTGGTATCAAATGCAATCCTAAAACCAATAGGGTCTCCGAGATTGTTCTTGATGGCTTCTCTTTATCTGGCCACATCGATCGTGGGCTTCTCAGGTTACAGTTTCTTCAAATACTTTCACTTGCTAACAACAATTTCACTGGCTCAATCAACTCTGCTCTTGCTCATCTTACAAGCTTACAAGTTCTTGATTTGAGTGACAACAGTTTATCAGGATCCATCCCTGAACAGCTCTTCCTGCAATGTGGATCAATAAGAGTCATTTCCTTTGCCAGAAACAATCTCACAGGACAAATCCCACAATCCTTAGCCTCATGCTTTTCTCTAGAGATTCTAAACTTTTCATCAAATCATTTATCTGGGAAATTGCCATCTGGGTTATGGTATTTGAGAGGGATTCAATCACTAGATTTCTCAAACAACTTGCTTGAAGGGCAGATTCCTTCTGGGATTCAAAGTTTATATGATTTGAGATTGGTTAACTTACAGAAGAATCGTTTTTCTGGAAGGGTTCCCGAGGATATTGGTGGCTGTTTGTTTCTGAAATCAATTGATTTTAGTGATAATATCCTTTCTGGTGGGCTACCAGAGTCAATGCAGATGCTTAGTTCTTGCAGTTATTTGAATTTACGAGGGAATTCTCTGATGGGTGAAGTTCCTCGTTGGGTTGGGGAGCTTAAAAATCTTGAGATTTTGGATCTTTCTGCTAATAACTTCTCTGGTCAAGTGCCAAGTTCAATAGGAAATCTTCAATTGTTGAAGAAGTTTAATGTTTCTATGAACAATTTTACTGGAAACTTGCCTGAATCCATGGCGGATTGTAAGAATCTCTTGAGTATTGATGCTAGCCATAATCATTTGAATGGGTATCTCCCATCTAATGTTGGAGAGCTTAGGAACTTGCTGTTGCTGAATTTATCAAGAAACCATCTCGTGGGTTCTGTTCCTGGTAGTATTGGTGAGCTGAAATCAGTATATGTTCTTGACTTCAGTGATAATCAATTGAATGGAAGTGTTCCTGTTGAAATTGGAGGAGCTGTCTCACTCAAGGAGTTGTGGCTGGAGAAGAACTTACTCACTGGGGAAATTCCTATCTCCATTGTCAAATGCTCGTTGTTAACATCATTGATGGTTTCTCACAACAACCTCACAGGCACAATTCCTGCTGCTCTTGCAAATCTCTCCAACCTTCAAAACGTAGACTTGTCTTTCAACAAACTCACTGGAAGCCTGCCCAAGGAGCTCACTAATCTTTCCCACCTCCTATCCTTTAACATCTCCCACAATCACCTTAATGGAGAGCTCCCAGCTGGGGGCTTCTTCAACACCATATCTCCCTTCTCCATTTCACATAACCCATCTCTTTGTGGCGCTGTCGTCAACCGGTCCTGCCCCTCTGTCCACCCGAAACCAATCGTCCTAAACCCAAACTCTTCGGATACCAACGCCAATTCCCCCTCCCACAAGCATCACCATGAGATAATACTAAGCATATCATCCATCATTGCTATTGGTGCAGCTTCTTTCATCCTACTTGGTGTGGTAGCTGTGAGTATCCTTAACATCCGTGCAAGGTCCTCACAGGCACGTTCTGCTGCTCTTGCATTATCTGCTGGGGAGGATTTTAACTGCTCCCCAAAAACTAACCCAGACTATGGAAAGCTTGTCATGTTTTCAGGAGATGCAGAGTTTGTGTTTGGTGCTCAAGCATTGTTGAATAAGGATTGCGAGCTCGGTCGAGGTGGGTTTGGAGTTGTTTACAGAACGGCGCTTCGAGACGGTTGTTTAGTTGCAATCAAGAAGCTAACTGTCACAAGCTTGATCAAGTCCCAAGAGGATTTTGAAAGTGAAGTGAAGAAGCTGGGGCAGATCAGGCATCATAATCTGGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTACTTATCTATGAACATGTCCAAAATGGAAGCTTGTATAAACATCTACACGACCGAACGAGCGACGATTGCTTGTCGTGGCAGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGGTTGGCTTATTTGCACCAGAACGATATAATTCATTACAATTTGAAGTCGACCAATGTCTTGATAGACAGTTCTGGGACACCAAAAGTGGGGGACTATGGCTTGGCAAGGCTGCTGCCAATGTTGGACCGTTGCATCTTAAGCAGCAAAATCCAAAGTGCTTTGGGCTATATGGCTCCAGAGTTTGCCTGCAAAACAGTAACCATAACTGAGAAATGTGATGTTTATGGGTTTGGCATCTTGGTTTTGGAAGTGGTGACAGGAAAAAGACCTGTGGAGTACATGGAAGATGATGTTATAGTGCTCTGTGATATGGTGAGGGCGGCTTTGGACGATGGCACGGTCGAGCAATGTGTTGATGAGAGGCTTCGATCGAACTTCCGTGTTGAGGAGGCCGTTCCTGTAATGAAACTTGGTTTGATATGTGCTTCTCAAGTGCCATCTAACAGGCCAGATATGAATGAGGTTGTCAATATATTAGAGATGATCCAATCCCCATGTGAAGCTGAGGAGGGCTTGGAATGA 2739 43.04 MIFKLFLLLLLAPAAVHCLDTVFNDDVLGLIVFKAGLQDPLGKLISWNEEDDTPCNWFGIKCNPKTNRVSEIVLDGFSLSGHIDRGLLRLQFLQILSLANNNFTGSINSALAHLTSLQVLDLSDNSLSGSIPEQLFLQCGSIRVISFARNNLTGQIPQSLASCFSLEILNFSSNHLSGKLPSGLWYLRGIQSLDFSNNLLEGQIPSGIQSLYDLRLVNLQKNRFSGRVPEDIGGCLFLKSIDFSDNILSGGLPESMQMLSSCSYLNLRGNSLMGEVPRWVGELKNLEILDLSANNFSGQVPSSIGNLQLLKKFNVSMNNFTGNLPESMADCKNLLSIDASHNHLNGYLPSNVGELRNLLLLNLSRNHLVGSVPGSIGELKSVYVLDFSDNQLNGSVPVEIGGAVSLKELWLEKNLLTGEIPISIVKCSLLTSLMVSHNNLTGTIPAALANLSNLQNVDLSFNKLTGSLPKELTNLSHLLSFNISHNHLNGELPAGGFFNTISPFSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDTNANSPSHKHHHEIILSISSIIAIGAASFILLGVVAVSILNIRARSSQARSAALALSAGEDFNCSPKTNPDYGKLVMFSGDAEFVFGAQALLNKDCELGRGGFGVVYRTALRDGCLVAIKKLTVTSLIKSQEDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEHVQNGSLYKHLHDRTSDDCLSWQQRFKIVLGMAKGLAYLHQNDIIHYNLKSTNVLIDSSGTPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRAALDDGTVEQCVDERLRSNFRVEEAVPVMKLGLICASQVPSNRPDMNEVVNILEMIQSPCEAEEGLE 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 954289 958049 + CmaCh06G001860.1 Cma06g00186 295740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00186 912 Gene3D Ribonuclease Inhibitor 27 136 IPR032675 -
Cma06g00186 912 ProSitePatterns Protein kinases ATP-binding region signature. 635 658 IPR017441 GO:0005524
Cma06g00186 912 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 342 903 - -
Cma06g00186 912 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 4 350 - -
Cma06g00186 912 Pfam Protein tyrosine and serine/threonine kinase 631 897 IPR001245 GO:0004672|GO:0006468
Cma06g00186 912 Gene3D Phosphorylase Kinase; domain 1 623 705 - -
Cma06g00186 912 ProSiteProfiles Protein kinase domain profile. 629 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00186 912 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 350 - -
Cma06g00186 912 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 342 903 - -
Cma06g00186 912 Pfam Leucine rich repeat 430 488 IPR001611 GO:0005515
Cma06g00186 912 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cma06g00186 912 Gene3D Transferase(Phosphotransferase) domain 1 706 909 - -
Cma06g00186 912 CDD STKc_IRAK 635 899 - -
Cma06g00186 912 PRINTS Leucine-rich repeat signature 117 130 - -
Cma06g00186 912 PRINTS Leucine-rich repeat signature 283 296 - -
Cma06g00186 912 ProSiteProfiles Leucine-rich repeat profile. 116 138 IPR001611 GO:0005515
Cma06g00186 912 SUPERFAMILY L domain-like 187 535 - -
Cma06g00186 912 SUPERFAMILY L domain-like 41 252 - -
Cma06g00186 912 SMART LRR_typ_2 451 474 IPR003591 -
Cma06g00186 912 SMART LRR_typ_2 355 379 IPR003591 -
Cma06g00186 912 SMART LRR_typ_2 283 307 IPR003591 -
Cma06g00186 912 SMART LRR_typ_2 475 499 IPR003591 -
Cma06g00186 912 SMART LRR_typ_2 90 113 IPR003591 -
Cma06g00186 912 SMART LRR_typ_2 211 235 IPR003591 -
Cma06g00186 912 SMART LRR_typ_2 114 138 IPR003591 -
Cma06g00186 912 SMART LRR_typ_2 187 210 IPR003591 -
Cma06g00186 912 Gene3D Ribonuclease Inhibitor 137 234 IPR032675 -
Cma06g00186 912 SUPERFAMILY Protein kinase-like (PK-like) 632 904 IPR011009 -
Cma06g00186 912 Gene3D Ribonuclease Inhibitor 236 524 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00186 Cma14g00011 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00186 Cma-Chr6:954289 Cma14g01481 Cma-Chr14:11254750 0 dispersed
Cma14g00011 Cma-Chr14:58262 Cma06g00186 Cma-Chr6:954289 9.69E-162 transposed
Cma14g00012 Cma-Chr14:59412 Cma06g00186 Cma-Chr6:954289 1.20E-38 transposed
Cma14g00010 Cma-Chr14:56848 Cma06g00186 Cma-Chr6:954289 5.25E-32 wgd
Cma15g00170 Cma-Chr15:777070 Cma06g00186 Cma-Chr6:954289 0 wgd
Cma04g01061 Cma-Chr4:5479046 Cma06g00186 Cma-Chr6:954289 0 wgd
Cma04g00102 Cma-Chr4:508360 Cma06g00186 Cma-Chr6:954289 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68617 PF07714 PK_Tyr_Ser-Thr 1.60E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00186 - - csv:101222148 1489.94