Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00194 ATGAGTTATAACGAGAAGAATAGAGGGAGAGATGGTAGGGAAACCGAGCATCAGCCAGTTACGAGGAACTCTGTCGAGGCAGAACGGAAATCGGTCAGCCAAAATGGATCCATTACGGCTCAACAGTTGACGATTGATGAGAATCTTCTTGTTGACCCGAAATTACTATTCATTGGATCCAAGATTGGCGAGGGTGCTCACGGGAAGGTTTATGAAGGCAGGTATCGGAACAAAATCGTTGCCATTAAAGTTCTCCATCGAGGGAGTACTCCGGAGGAAAGAGCAGCACTAGAGAATCGTTTTGCTCGTGAAGTTAATATGATGTCCCGGGTAAAACATGACAATCTTGTCAAGTTTATTGGAGCTTGTAAAGAACCACTAATGGTGATAGTTACAGAGCTATTACCAGGAATGTCACTGAGGAAGTATCTGATGAATAATCGTAAGCAACGGCTGGATCCTCGGTTGGCTATTAACTTCGCATTGGATGTTGCTCGTGCTATGGATTGTCTACATGCCAATGGGATTATACATAGAGATCTGAAACCCGACAATTTGTTGCTTACTGCAAACCAAAGGTCTGTGAAGCTTGCAGACTTTGGCCTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCCGAAACAGGGACTTACCGCTGGATGGCTCCTGAGTTGTATAGCACTGTGACCTTGCGCCAGGGAGAGAAGAAGCATTACAACAACAAGGTCGATGTATACAGCTTTGGAATTGTCTTATGGGAACTCTTGACGAATCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCATATGCTGCTGCTTTCAAGCAAGAGAGGCCTAGCATTCCAGGCGACATACCTCCTGATCTAGCATTTATAGTACAGTCGTGTTGGGTTGAAGATCCCAACATGAGGCCCAGCTTCAGCCAGATCATCCGGATGCTTAATGAATATCTATTTACACTCCCACCTCCTTTGCTATCTTCACAAGCATCTTATACAACCGAGACAGCAACGACTAGCGACGGTGCTGTAACCGAGTTCTCCGCTCGAACAAGAGGAAAGTTTGGATTCCTTCGCCAACTGTTTGCTGCTAAAAAGGCTAAGGGCTCGCAATAA 1125 45.42 MSYNEKNRGRDGRETEHQPVTRNSVEAERKSVSQNGSITAQQLTIDENLLVDPKLLFIGSKIGEGAHGKVYEGRYRNKIVAIKVLHRGSTPEERAALENRFAREVNMMSRVKHDNLVKFIGACKEPLMVIVTELLPGMSLRKYLMNNRKQRLDPRLAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDIPPDLAFIVQSCWVEDPNMRPSFSQIIRMLNEYLFTLPPPLLSSQASYTTETATTSDGAVTEFSARTRGKFGFLRQLFAAKKAKGSQ 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 988739 992117 - CmaCh06G001940.1 Cma06g00194 295748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00194 374 MobiDBLite consensus disorder prediction 1 37 - -
Cma06g00194 374 ProSitePatterns Protein kinases ATP-binding region signature. 62 83 IPR017441 GO:0005524
Cma06g00194 374 Pfam Protein tyrosine and serine/threonine kinase 58 317 IPR001245 GO:0004672|GO:0006468
Cma06g00194 374 PRINTS Tyrosine kinase catalytic domain signature 132 145 IPR001245 GO:0004672|GO:0006468
Cma06g00194 374 PRINTS Tyrosine kinase catalytic domain signature 170 188 IPR001245 GO:0004672|GO:0006468
Cma06g00194 374 PRINTS Tyrosine kinase catalytic domain signature 244 266 IPR001245 GO:0004672|GO:0006468
Cma06g00194 374 PRINTS Tyrosine kinase catalytic domain signature 288 310 IPR001245 GO:0004672|GO:0006468
Cma06g00194 374 Gene3D Transferase(Phosphotransferase) domain 1 139 344 - -
Cma06g00194 374 CDD STKc_MAP3K-like 62 317 - -
Cma06g00194 374 SMART serkin_6 56 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00194 374 ProSiteProfiles Protein kinase domain profile. 56 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00194 374 Gene3D Phosphorylase Kinase; domain 1 44 135 - -
Cma06g00194 374 PANTHER SERINE-THREONINE PROTEIN KINASE 18 351 - -
Cma06g00194 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Cma06g00194 374 MobiDBLite consensus disorder prediction 1 24 - -
Cma06g00194 374 SUPERFAMILY Protein kinase-like (PK-like) 55 338 IPR011009 -
Cma06g00194 374 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 18 351 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00194 Cma14g00018 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02680 Cma-Chr4:18179202 Cma06g00194 Cma-Chr6:988739 3.05E-147 dispersed
Cma06g00194 Cma-Chr6:988739 Cma10g00092 Cma-Chr10:373193 1.55E-152 dispersed
Cma14g00018 Cma-Chr14:75726 Cma06g00194 Cma-Chr6:988739 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68619 PF07714 PK_Tyr_Ser-Thr 3.60E-61 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00194 - - cmax:111481423 660.218