Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00213 ATGCAGATTCTTGCACCAAAAATAGCTGTTTGGTGCTCTAAATCATCCAATAAGAACAGAAAATGGACGATCCAACAATGGAGAAATGGTTATTCGTACCTCAATGCTCTGTTTTTCGCTCATCTTTTGGCTTTTTCTCTTCAATCTGTCACCGGCCAGATGTGGGATGGAGTGGTTGTTACACAAGGAGATTTTCAAGCTCTTCAAGCTATAAAGCATGAACTTATTGATGTGAAAGGCGCTTTACATAGCTGGAATGGCAGTAATGGAGCTTGTTCCGGGCAGTGGGCAGGAATCAAGTGTGTGAAGGGACAGGTCATTGCCATACAGCTTCCATGGAAGGAACTCGCCGGCCGGATTTCCGACAGAATTGGGCAGCTCCGGGAACTTCGGAAGCTCAGCCTTCATGATAATGCGATCTCCGGCACCATTCCTCGGTCGCTCGGGTACCTTCCGAATCTCAGAGGAATTTATCTTTTCAACAACAGATTTTCAGGGTCTATTCCTCCTACAATTGGTAATCTTCCCCTTCTTCAAACTCTTGATTTGAGCAACAATTTCCTCACTGGAGAAATTCCTTCTAGTCTTGCAAATTCAACCAAATTGATTAGAGTTAATCTGAGCTACAATTCATTGTCGGGATCCATACCTCGAAGTTTTACACGGTCGTTTTCTCTTATAATTCTTGCCCTTCAGCACAATAATGTTTCTGGGATTGTCCCAGATTCTTGGGGTGGGTTTGGAAACAGAACTTGTCCACTTGGGGTTTTAACGCTTGATCATAATGTTATATCTGGAACAATTCCACCTTCTTTGACCAAATTGGAATGGCTTCAAGAGATTTCTTTCAGTGAAAATAAGATCTCTGGGGCTATACCAGCTGAAATCGGCAGGCTGAAGAGACTTCGCCGGTTGGATTTGTCGAAGAACGCCATCAATGGTGGCTTCCCTTCAAGTTTCACCAATCTGTCTTCTCTTGAGTCATTGAATGTTGAAGATAATCGCCTTGAAAGCCAGATTCCTGGAGATATTGATAGATTGCAGAATCTCTCAGTGATTAAGCTTGGGAAGAATCGATTTAATGGGGAGATTCCTGCAAGTTTAGGGAACATTTCTGCTATTAAACAACTTGATTTCTCAGAAAATAACTTCATGGGACAGATTCCACCATCATTGACTAATTTGTTGAATCTAACATCTTTCAATGTCTCCTACAACAATCTCTCTGGTCCTGTCCCAATTCCCCTGTCAAATAAGTTCAATGCGAGCTCTTTTGTTGGGAACCTTAAACTGTGTGGTTTTAGTTCTTCAACTCCATGTCTACCTGCTTCCTCCCCACAGAATATTACAAACCCATCAACCGAAGTCCCGAAACTGCATCGCCACCGCAAACTAAGTGTAAAGGACATAATTCTGATAGCGGCCGGAGCGCTGTTGGTGCTTCTACTTATTCTTTGCTCGATTTTACTCTGCTGTTTATTGTCAAAAAGAGCTGCTTCCAAAAAGAATGACAACATAACAGCCAAACAAGCTGCCGTGAGGAGCATCGAGAAAGGTAGTACTGAAGTAGGGGCGAGCGAAGCTGGCGGAAAACTAGTTCATTTTGATGGGCCATTTGTTTTCACTGCCGATGATCTTCTGTGTGCAACTGCGGAGATTATGGGCAAGAGCACATATGGAACAGCATACAAAGCAACATTAGAAGATGGTAATGAAGTAGCAGTGAAAAGATTAAGGGAAAAGACAACAAAAGGGCAGAAGGAATTCGAAACCGAAGTTGCGGGACTCGGAAAAATTCGACACCCGAATCTACTTGCTCTTACAGCATACTACTTGGGCCCCAAAGGAGAGAAGCTTCTTGTCTTTGAATACATGCCTAGAGGAAGCCTCTCTTCCTTTCTTCATGCTCGCGGGCCGGAAACGACAGTCGATTGGGCAACAAGGATGAAGATAGTGATTGGAATTACGCAAGGCTTAAACTATCTCCACACAGAGGAGAATCTAATTCATGGAAACCTCACATCCAGCAACATTTTGTTGGATGATCAAACCAATGCTCGTATAGCGGATTTTGGGCTTCCTAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGAACACAGGGCTACAATGCACCAGAGCTAACAAAGACCAAGAAACCGACAGCAAAGACAGATGTTTACAGCCTTGGAGTCATAATATTGGAAAACTTGACAGGAAAATCACCTGGAGAAGCCATGGATGGAATGGATTTACCTCAGTGGGTGGCCTCAAAAGTGAAGGAGGAGTGGACAAATGAAGTGTTTGATTTGGAGCTGATGAAAGACACACCCAATATTGGCGATGAACTGCTGAACACTTTAAAACTAGCCCTGCATTGCGTCGATCCCTCGCCAGCTTCTCGGCCCGACGTACCGCAAATTCTCCAGCAACTGGAGGAAATTAAGGCGGCTTCTACTTCTGGTGATGATGGCGCCAAAGATCAACCAGCAAATGAATAG 2514 43.99 MQILAPKIAVWCSKSSNKNRKWTIQQWRNGYSYLNALFFAHLLAFSLQSVTGQMWDGVVVTQGDFQALQAIKHELIDVKGALHSWNGSNGACSGQWAGIKCVKGQVIAIQLPWKELAGRISDRIGQLRELRKLSLHDNAISGTIPRSLGYLPNLRGIYLFNNRFSGSIPPTIGNLPLLQTLDLSNNFLTGEIPSSLANSTKLIRVNLSYNSLSGSIPRSFTRSFSLIILALQHNNVSGIVPDSWGGFGNRTCPLGVLTLDHNVISGTIPPSLTKLEWLQEISFSENKISGAIPAEIGRLKRLRRLDLSKNAINGGFPSSFTNLSSLESLNVEDNRLESQIPGDIDRLQNLSVIKLGKNRFNGEIPASLGNISAIKQLDFSENNFMGQIPPSLTNLLNLTSFNVSYNNLSGPVPIPLSNKFNASSFVGNLKLCGFSSSTPCLPASSPQNITNPSTEVPKLHRHRKLSVKDIILIAAGALLVLLLILCSILLCCLLSKRAASKKNDNITAKQAAVRSIEKGSTEVGASEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFETEVAGLGKIRHPNLLALTAYYLGPKGEKLLVFEYMPRGSLSSFLHARGPETTVDWATRMKIVIGITQGLNYLHTEENLIHGNLTSSNILLDDQTNARIADFGLPKLMTSAAATNVIATAGTQGYNAPELTKTKKPTAKTDVYSLGVIILENLTGKSPGEAMDGMDLPQWVASKVKEEWTNEVFDLELMKDTPNIGDELLNTLKLALHCVDPSPASRPDVPQILQQLEEIKAASTSGDDGAKDQPANE 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1087094 1089941 + CmaCh06G002130.1 Cma06g00213 295767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00213 837 Gene3D Transferase(Phosphotransferase) domain 1 626 834 - -
Cma06g00213 837 Pfam Leucine rich repeat N-terminal domain 63 101 IPR013210 -
Cma06g00213 837 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 26 823 - -
Cma06g00213 837 CDD STKc_IRAK 554 819 - -
Cma06g00213 837 SMART LRR_typ_2 175 199 IPR003591 -
Cma06g00213 837 SMART LRR_typ_2 323 347 IPR003591 -
Cma06g00213 837 SMART LRR_typ_2 299 322 IPR003591 -
Cma06g00213 837 SMART LRR_typ_2 127 151 IPR003591 -
Cma06g00213 837 Pfam Protein tyrosine and serine/threonine kinase 552 816 IPR001245 GO:0004672|GO:0006468
Cma06g00213 837 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 26 823 - -
Cma06g00213 837 Pfam Leucine Rich Repeat 178 197 IPR001611 GO:0005515
Cma06g00213 837 Pfam Leucine rich repeat 301 360 IPR001611 GO:0005515
Cma06g00213 837 Gene3D Ribonuclease Inhibitor 225 447 IPR032675 -
Cma06g00213 837 Gene3D Phosphorylase Kinase; domain 1 554 625 - -
Cma06g00213 837 Gene3D Ribonuclease Inhibitor 62 224 IPR032675 -
Cma06g00213 837 ProSiteProfiles Protein kinase domain profile. 548 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00213 837 SUPERFAMILY Protein kinase-like (PK-like) 552 820 IPR011009 -
Cma06g00213 837 SUPERFAMILY L domain-like 87 432 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00322 Cma06g00213 CCT
Cma06g00213 Cma14g00042 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00213 Cma-Chr6:1087094 Cma03g00702 Cma-Chr3:5732636 4.05E-57 dispersed
Cma14g00042 Cma-Chr14:179836 Cma06g00213 Cma-Chr6:1087094 0 wgd
Cma04g01090 Cma-Chr4:5610847 Cma06g00213 Cma-Chr6:1087094 0 wgd
Cma04g00125 Cma-Chr4:592508 Cma06g00213 Cma-Chr6:1087094 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68620 PF07714 PK_Tyr_Ser-Thr 6.60E-40 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00213 - - bhj:120090401 1414.82