Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00215 ATGGCTATAGCCTTTGCAGCTCCTTTGGCTCTTCTTTCTGTGCTCCTCTTTTTGGCTGCTCATTCTGTGCAGTCTTCATTTCCCTACCATGGATTCAATGACACGGAATTTGCTCTTGATGGAGCGCTTGTTCTGAATCCTTCTGGTGCGTTGAGGCTCACCAATCGATCACGTAACGTTATAGGGCATGCATTCTATCCGACTCCATTCCAGATGTTTGATAAAAATTCTGACCCATCTGCAAATGTGTCATCCTTCAACACAACTTTTGTTTTTGCAATCAATCCATCGAGCCCCGGACAAGGTGGCTACGGTCTGGCCTTCGTCTTAGCTCCATCAACCAATTTTGAAGGTGCAGATAGTAAACACTTCCTTGGATTATTCAACTCTTATAACGATGGTAACCCTTCAAACCATATATTTGCTGTTGAATTTGACACTGTAAATGGGCATGAGGAAGACAAGAACACCAAAGGGAATCATGTTGGGATCAATATCAATAGCGTTTCATCAGTTGCATCCAAACCTGCTTCTTATTCCAACTATGGCGATGCTAATGAAAAGGACTTGCAAATGGATTCTGGTGATGCTATCATTGCTTGGATTGAGTATGATGGCCCCAACAAAATTGTGAACGTCACCGTAGCTCCCTTCACAAAACAGCAAAAGAAACCAACAGATCGACTCCTTTCCCATCAGATTGACCTGAAAGATGTTCTAAAGGAACAAATGTTTGTTGGCTTCTCGGCTTCAACAGGAGACCAAACAAGCTCTCATTACATTTTGGGATGGAGTTTTGCGGTGAATGGACCAGCGCCGTCGTTGAATTACTCTCTCCTTCCCAACCCTCCAAAAGAGCAAGATCTTGTTCCTCCGCCATCCAATTCCCACTTCAAGGTACTCATAGCAGTTTTTTCTGTGGTGACCATTCTAGGAATCTTTTTCTTAGCTTTCTGGTTTAGAAGAATGTGGCAAACTGAGTGGCTTGAGGATTGGGAACGAGACTGTCCTCATAGATTCAACTACAGAGATCTTTACACAGCAACAAAAGGATTCAAAAACAGCGGGCTAATTGGAATTGGGGGGTTTGGCTCAGTATACAAAGGTCAGATACGTTCAACTGGAATTGAGATTGCTGTGAAGAGAGTTAGAAAATACTCGCGCCAAGGAATGAAAGAATTCGCAGCAGAAATCGAAAGCTTAGGACGACTAAGACACAAAAACTTGGTGAATCTCCAAGGATGGTGCAAGAAAAGGAACGATCTACTCATAGTTTACGATTATATTCCAAATGGAAGCCTCTATTCACTTCTATATCATCCAAAAAACAACAACATATTGAATTGGAAACAGAGATTCAACATTCTCAAAGGAATTGCAGCAGGATTATTGTACCTTCACGAAGAGTGGGAGCAGGTAGTGATCCACCGAGATGTGAAGCCAAGCAATGTTCTAATAGACGCCGACATGAATGCTCGATTGAGCGATTTCGGTCTCGCCAGGCAATACGACCACGCCGAAGAATCGTACACAACCGGCGTCGTCGGCACGATTGGCTACATAGCGCCGGAGTTGGTACGCACCGGTAAGGCTTCGAAAAACACCGATGTGTTTGGCTATGGAGTTTTGCTTCTGGAAGTGGCATGTGGAAGAAAGCCTCTGGAATCGGATCAGTTCATACTGGTGGAATGGGTGATGGAATGCTATGAAACGGGACAGATCCTTTATGCGGCTGATCCGAAGTTGAATTTGGTTTATGAGGTTGAAGAAATGGAGATGGTGCTGCAGTTAGGGCTTCTTTGTACTCACCAGAGACCAGAAGCTCGGCCGACCATGAGACAGGTCACGAGGTTCCTTCACGGCGACGATCCAGTTCCAGCGGTCGACGATTGGGCTTGTTCCCAAACTTACTCCAAATGTAACTCGAGAATTACTGAAGTGATTTCAGCAAGGTCTTATCGTTCCTTGTCCATTGGCGCCATTTCTTCTAGCTCCATAGACGCGGGCCGGTAG 2013 44.81 MAIAFAAPLALLSVLLFLAAHSVQSSFPYHGFNDTEFALDGALVLNPSGALRLTNRSRNVIGHAFYPTPFQMFDKNSDPSANVSSFNTTFVFAINPSSPGQGGYGLAFVLAPSTNFEGADSKHFLGLFNSYNDGNPSNHIFAVEFDTVNGHEEDKNTKGNHVGININSVSSVASKPASYSNYGDANEKDLQMDSGDAIIAWIEYDGPNKIVNVTVAPFTKQQKKPTDRLLSHQIDLKDVLKEQMFVGFSASTGDQTSSHYILGWSFAVNGPAPSLNYSLLPNPPKEQDLVPPPSNSHFKVLIAVFSVVTILGIFFLAFWFRRMWQTEWLEDWERDCPHRFNYRDLYTATKGFKNSGLIGIGGFGSVYKGQIRSTGIEIAVKRVRKYSRQGMKEFAAEIESLGRLRHKNLVNLQGWCKKRNDLLIVYDYIPNGSLYSLLYHPKNNNILNWKQRFNILKGIAAGLLYLHEEWEQVVIHRDVKPSNVLIDADMNARLSDFGLARQYDHAEESYTTGVVGTIGYIAPELVRTGKASKNTDVFGYGVLLLEVACGRKPLESDQFILVEWVMECYETGQILYAADPKLNLVYEVEEMEMVLQLGLLCTHQRPEARPTMRQVTRFLHGDDPVPAVDDWACSQTYSKCNSRITEVISARSYRSLSIGAISSSSIDAGR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1099267 1101279 + CmaCh06G002150.1 Cma06g00215 295769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00215 670 ProSitePatterns Protein kinases ATP-binding region signature. 358 385 IPR017441 GO:0005524
Cma06g00215 670 CDD lectin_legume_LecRK_Arcelin_ConA 26 270 IPR001220 GO:0030246
Cma06g00215 670 ProSiteProfiles Protein kinase domain profile. 352 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00215 670 CDD STKc_IRAK 358 619 - -
Cma06g00215 670 Gene3D Phosphorylase Kinase; domain 1 337 428 - -
Cma06g00215 670 PANTHER - 17 666 - -
Cma06g00215 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 285 IPR013320 -
Cma06g00215 670 SUPERFAMILY Protein kinase-like (PK-like) 336 629 IPR011009 -
Cma06g00215 670 Pfam Legume lectin domain 25 278 IPR001220 GO:0030246
Cma06g00215 670 Pfam Protein kinase domain 353 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00215 670 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 17 666 - -
Cma06g00215 670 Gene3D - 23 275 - -
Cma06g00215 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Cma06g00215 670 SMART serkin_6 352 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00215 670 Gene3D Transferase(Phosphotransferase) domain 1 429 625 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00215 Cma14g00046 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00378 Cma-Chr3:4342576 Cma06g00215 Cma-Chr6:1099267 9.82E-13 dispersed
Cma06g00215 Cma-Chr6:1099267 Cma07g01005 Cma-Chr7:5205608 0 dispersed
Cma01g00871 Cma-Chr1:4911606 Cma06g00215 Cma-Chr6:1099267 0 transposed
Cma14g00046 Cma-Chr14:199606 Cma06g00215 Cma-Chr6:1099267 0 wgd
Cma06g00215 Cma-Chr6:1099267 Cma07g01040 Cma-Chr7:5422768 3.86E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68621 PF00069 Pkinase 2.30E-52 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00215 - - cmax:111470194 1290.79