Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00216 ATGGTCAAACTAAATGAAAGCAACTCACCGTTTTTCACAGTCAACCTTCTTTACGCGACTCCGCTGAAAAACATTCAACTCCTCCGTCCCTCAACCCAATTCCTTCAAGATCGGTCAAACAAATTCTCTTTATTGATGAACAACACCGCCCCGCCGGTACACATGGCCACCGGAACTCCGCCGTGGCTGAACACCGGCGACAACTCTTGGCAGATCACAGCCTCCACTTTGGTCGGACTTCAGAGCATGCCCGGCCTTGTAATTCTCTACGCAAGCATCGTTAAAAAGAAATGGGCTGTGAATTCTGCGTTTATGGCGCTTTACGCCTTCGCCGCCGTTCTAATCTGTTGGGTTCTGGTCGGCTACCGAATGGCCTTCGGCGATCAGCTGCTTCCTCTGTGGGGTAAAGGGATTCCAGCTCTGGGGCAAAGTTACCTAATTGACCGAGCCAATATCCCTGAAAGTGGCCATGTAAGCCACGACGGAAGGGTAACGCCGAGAATTGAGCCGAATATTCCGATGGCTTCTCTGGTGTATTTTCAGTTCACCTTTGCTGCGATTACTGTGATTTTACTTGCAGGCTCTGTTCTTGCGAGAATGAACATCAAAGCCTGGATGGCGTTTGTTCCTCTTTGGGTAATTTTCTCCTACACCGTCGGCACCTACACGATTTGGGGCGGAGGGTTTCTCTTCCAATGGGGCGTGATTGATTACTCCGGCGGCTTTGTTATTCATCTTTCTTCTGGAATTTCTGGCTTAACCGCCGCTTATTGGGTTGGGCCGAGGATTAAAAGTGACAGAGAGAGGTTTCCGCCGAATAATGTGTTGCTGATGTTGGCCGGAGCTGGGATGTTGTGGATGGGGTGGTCGGGATTTAACGGTGGCGCACCGCACTCGGCGAACGTGGTGGCGTCGATTGCGGTGCTGAATACGAACGTGAGTGCAGCGACGAGCCTGCTGGTTTGGACCATTTTGGATGTGTTCTACTTCGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACCCCCGGCGCAGGAGTCGTGCAGACGTGGGCAGCTATTATAATGGGAGTTATGGGAGGGAGTATTCCATGGGTATCTATGATGATTCTCCACAAAAAGTTGAGTTTCTTGCAAAAGGTTGACGACACGCTTGGCGTATTTCACACGCACGCGGTAGCGGGAATGATGGGCGGGCTTCTAACGGGCCTTTTAGCAGAGCCCACTCTTTGCGAACTATACCTACCGATCCCCGACAGCCGCGGTGCCTTCTACGGCAAAAACGGCGGCGTTCAGTTTCTGAAGCAACTGGCTGGAGCCATGTTCATAATCGGATGGAACATCGTCTCCACCACCATTATTCTCCTCTTCATTCGGCTGTTTATGCCGTTGCGGATGCCGGACGAGGAACTCATGATCGGAGACGACGCCGTCCACGGCGAGGAGGCTTATGCCCTGTGGGGCGACGGCGAGAAATTCGATCCCAGAAGGCACGGCAATGCGGCGGCGAATGTGGAAGAAGGAACTTCCCCGCCTTATATCAATGGTGCCAGAGGAATCCGTCGTAAACGATGGAGATTCTTTTGCGATTTTCGTAACGATGAGTGTCTGTATTTTATAGGAAATGAACGGCGAACGAAGCTCATAATGGTGATATTAGTGGGTGCACCTGGAAGCGGAAAGTCCACCTTCTGCGAACTCGTAATGGCTTCCTCTTCTCGCCCTTGGGTTCGAATCTGCCAGGATACCATTGGAAATGGCAAGTCCGGAACCAAAGCACAGTGTTTGAAGAGTGCAGCCAGTGCATTGAATGATGGAAAGAATGTATTTGTGGACAGATGCAATCTTGAAATAGAGCAGCGTTCTGAGTTTGTGAAACTAGGTAGCTCTCTAGTGGATGTACATGCTGTTGTATTGGATCTTCCTGCACAGCTCTGTATCTCCCGTTCGGTTAAGCGGACCGGTCATGAAGGGAACCTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAAGAAAGAATTGCCGAACCTGAATGAAGGGTTCAAGCGTATAGCATTTTGTCACAGTGAAACGGACGTTCAATCCGCTATAGATACGTATAAATCACTTGGTTTACATGATGCACTTCCAGATGGATGTTTTGGACAGAAGAATGCAGACAAGAAAGTACAATTAGGCATAATGATGTTCTTAAAGAAAGCAGAAAATCCTGCTAAAACATGTTCTAATGCCAATACCATTAAGGATTTTCCAAGTTCTCAAACTACCCAGGAAAAGAAAGAGTCTTCCTGCACAATGTTGAGCAACGTCAATAAAGAGTCGGAGAAAGGCGAAAATCCAGGCATTAGATCCTTAGAAAACAATATTTCTGGAAGTGATCCTCCAACTCTTGCGTTTCCTTCTATTTCAACATCGGATTTCAAGTTCAGCCATGAAAAGGCTGCTGAAATTATTGTTGAGATGGTGGAGGAATTCATGGATAAGCTTGGGAATGCCAGACTTGTTATGGTAGACATAAGTCATGGATCAAAGATTTTGTCTTTGGTTAAAGCTAAAGCGGCCAAGAAAAATATTTGTTCCACCAAGTTTTTTACATTTGTAGGTGATATAACTAAACTCAAGTCAGATGGTGGATTGCACTGCCATGTAATAGCCAATGCTGCAAACTGGCGATTGAAACCAGGAGGGGGTGGTGTCAATGCCGCAATTTTTAGTGCTGCAGGTCCCAGTCTGGAAGAGGCAACAAAACAACAAGCCAAGTCCCTTCGACCTGGCAGTGTTGTGGCCGTTCAATTGCCTTCAACTTCTCCTTTGTTTAATAGGGAAGGGGTAACCCATGTCATACATGTTCTTGGACCAAACATGAATCCTCAAAGACCAAATTATCTCAACAATGATTATGATGAAGGTTGCAAGCTTCTTCGTGATGCTTATTCTTCTCTATTTCAAGCCTTTATTTCAATAGTAAAAGATGAGTTTAAGTCGGCGAAGGGAATTGACAAACGCCTTGGCTCAGCACCTTCAGAATCACGAAAACACTCTGAGGACACCCATCACAAGTTTAAGAGAGCGGAGTTCCAAATTCCTGAAAGAAGCAAAAAGTGGAAAGGAACTCAGGAATCAGCTGAAGCATTAAACCAAAACAACAATAAGATTTCCCACAAGATGAGTAAGCACTGGGGCTCGTGGGCACAAGCACTTTACAACACTGCAATGTATCCTGAGAGACATGCCAATACTGTACTGGAGACATCAGATGATGTTGTAGTACTGAATGATATTTATCCAAAAGCACGCAAGCATCTTCTGATAGTGGCTCGATATGAAGGCCTCGATCAACTAGCTGATGTACATATAGAACACCTTCCACTGTTGAAGACGATGCACGCCGTGGGTTTGAAGTGGATTGATAAGTTCATTCATGACGATGCATCATTGGTTTTTCGCCTCGGATACCACTCGGCTCCATCCATGAGGCAACTGCACCTACATGTTATAAGCCAAGATTTTGACTCCAGTCATCTGAAGAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCCGAGACTCGGTCGATGTTATAGACGAAGTCAGTAACCATGGAAAGGCAATCATCAAGGACGACGAGAGCTTGATGTCTATGGAGTTTCGTTGCAACAGATGCAGAAGTGCCCATCCCAACTTACCCAAATTGAAAACACATGTTTCCAAATGCCAATCGCCTTTCCCTTCCACGCTACTCGAGGGCAGTCGTTTAGTGAATGCTTCAGGTAATTCTCGTAACTCTCTTTCGTAG 3837 46.76 MVKLNESNSPFFTVNLLYATPLKNIQLLRPSTQFLQDRSNKFSLLMNNTAPPVHMATGTPPWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVGYRMAFGDQLLPLWGKGIPALGQSYLIDRANIPESGHVSHDGRVTPRIEPNIPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFSYTVGTYTIWGGGFLFQWGVIDYSGGFVIHLSSGISGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGMLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVMGGSIPWVSMMILHKKLSFLQKVDDTLGVFHTHAVAGMMGGLLTGLLAEPTLCELYLPIPDSRGAFYGKNGGVQFLKQLAGAMFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAANVEEGTSPPYINGARGIRRKRWRFFCDFRNDECLYFIGNERRTKLIMVILVGAPGSGKSTFCELVMASSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKNVFVDRCNLEIEQRSEFVKLGSSLVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQKKELPNLNEGFKRIAFCHSETDVQSAIDTYKSLGLHDALPDGCFGQKNADKKVQLGIMMFLKKAENPAKTCSNANTIKDFPSSQTTQEKKESSCTMLSNVNKESEKGENPGIRSLENNISGSDPPTLAFPSISTSDFKFSHEKAAEIIVEMVEEFMDKLGNARLVMVDISHGSKILSLVKAKAAKKNICSTKFFTFVGDITKLKSDGGLHCHVIANAANWRLKPGGGGVNAAIFSAAGPSLEEATKQQAKSLRPGSVVAVQLPSTSPLFNREGVTHVIHVLGPNMNPQRPNYLNNDYDEGCKLLRDAYSSLFQAFISIVKDEFKSAKGIDKRLGSAPSESRKHSEDTHHKFKRAEFQIPERSKKWKGTQESAEALNQNNNKISHKMSKHWGSWAQALYNTAMYPERHANTVLETSDDVVVLNDIYPKARKHLLIVARYEGLDQLADVHIEHLPLLKTMHAVGLKWIDKFIHDDASLVFRLGYHSAPSMRQLHLHVISQDFDSSHLKNKKHWNSFNTDFFRDSVDVIDEVSNHGKAIIKDDESLMSMEFRCNRCRSAHPNLPKLKTHVSKCQSPFPSTLLEGSRLVNASGNSRNSLS 1278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1102589 1109618 + CmaCh06G002160.1 Cma06g00216 295770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00216 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 558 699 IPR027417 -
Cma06g00216 1278 MobiDBLite consensus disorder prediction 781 805 - -
Cma06g00216 1278 Pfam Macro domain 897 981 IPR002589 -
Cma06g00216 1278 Gene3D Leucine Aminopeptidase, subunit E, domain 1 867 1008 IPR043472 -
Cma06g00216 1278 ProSiteProfiles Macro domain profile. 862 1115 IPR002589 -
Cma06g00216 1278 Pfam AAA domain 558 680 - -
Cma06g00216 1278 PANTHER AMMONIUM TRANSPORTER 2 55 529 - -
Cma06g00216 1278 Pfam Ammonium Transporter Family 70 492 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cma06g00216 1278 SUPERFAMILY HIT-like 1063 1236 IPR036265 -
Cma06g00216 1278 Pfam C2HE / C2H2 / C2HC zinc-binding finger 1197 1250 IPR032566 -
Cma06g00216 1278 ProSitePatterns HIT domain signature. 1161 1179 IPR019808 -
Cma06g00216 1278 PANTHER AMMONIUM TRANSPORTER MEP2 55 529 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cma06g00216 1278 SUPERFAMILY Macro domain-like 856 995 IPR043472 -
Cma06g00216 1278 TIGRFAM amt: ammonium transporter 67 492 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cma06g00216 1278 Gene3D - 1074 1255 IPR036265 -
Cma06g00216 1278 Gene3D - 549 714 IPR027417 -
Cma06g00216 1278 Gene3D Leucine Aminopeptidase, subunit E, domain 1 765 866 IPR043472 -
Cma06g00216 1278 ProSiteProfiles HIT domain profile. 1079 1187 IPR011146 GO:0003824
Cma06g00216 1278 Pfam Scavenger mRNA decapping enzyme C-term binding 1083 1192 - -
Cma06g00216 1278 SMART YBR022w_8 874 1048 IPR002589 -
Cma06g00216 1278 ProSitePatterns Ammonium transporters signature. 237 262 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cma06g00216 1278 Gene3D Ammonium transporter AmtB like domains 45 495 IPR029020 -
Cma06g00216 1278 SUPERFAMILY Ammonium transporter 62 474 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00216 Cma14g00047 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00216 Cma-Chr6:1102589 Cma02g01713 Cma-Chr2:9641402 7.29E-22 dispersed
Cma03g00646 Cma-Chr3:5495475 Cma06g00216 Cma-Chr6:1102589 4.15E-166 transposed
Cma05g00406 Cma-Chr5:1788453 Cma06g00216 Cma-Chr6:1102589 0 transposed
Cma14g00047 Cma-Chr14:204352 Cma06g00216 Cma-Chr6:1102589 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00216 K10863 - csv:101216867 1196.03