Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00225 AACGACGATTCTTTTTTTTTTTTCTTTTTCTTTTCTTTTCTTTTTTTTCTATATAATTTTCTCAAGTTTTTGGTACTCATGGAAGGCCACAATCCTCATCCCCTTGTTCATCTCCACCTTCAGCAGCAACAACAGCAACAACAGCAACAACTTCAACATCCTCCGCCGCCACCGCCGCCGCAGCAGCAGCATCTCCACCAAAACCTCGCCGATCAAACCGCCGTCAACGCCGTCACCGACAGATTTCCTCAATGGAGTATTCAAGAAACAAAGGAGTTTTTAATGATCCGAGCCGAGCTGGATCAGCGGTTCATGGAGACCAAACGCAACAAACTCTTGTGGGAAATCACCGCCGCCAAAATGAAAGAAAAGGGTTTCAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTCACCCGTTACAAGGGTTGTGAAACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAGCTACAAGCAATTTTCGGGGCAAGAATGCATCGAATATTATGGGCGGAAGCGGAGAGCGGAGGGAGTGGATCAAAGAAGAAGACGACAGTGTTATCGTCCGATGAAGATGACGAGAACGAGGACAGCGATGGGGACGGAGGCGACACGAAAGCGAGCGGTAGGAAGAGTAAGAAGAAGGGTAAAGGCAACGGCGGAGGAAGCAGTAGTATCAATCATTTAAAGGAAATTTTAGAAGATTTCATAAACCAACAAATTCAAATGGAGATTCAATGGAAGGAGGCGTTTGAAGCAAGGGAAAAAGAGAGACAAATTAGGGAAATGGAGTGGAGAAGGAAAATGGAAGCTTTAGAACATGAGAGGATAATGTTGGAAAGAAGATGGAGAGAAAGGGAAGAACAAAGAAGAATGAGAGATGAAGTTAGGGCTGAGAAAAGAGATGGTTTAATCACAGCTTTGTTAAACAAGCTTGGAAGAGATGATCATATATAA 981 43.73 NDDSFFFFFFFSFLFFLYNFLKFLVLMEGHNPHPLVHLHLQQQQQQQQQQLQHPPPPPPPQQQHLHQNLADQTAVNAVTDRFPQWSIQETKEFLMIRAELDQRFMETKRNKLLWEITAAKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFGARMHRILWAEAESGGSGSKKKTTVLSSDEDDENEDSDGDGGDTKASGRKSKKKGKGNGGGSSSINHLKEILEDFINQQIQMEIQWKEAFEAREKERQIREMEWRRKMEALEHERIMLERRWREREEQRRMRDEVRAEKRDGLITALLNKLGRDDHI 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1153663 1155115 - CmaCh06G002250.1 Cma06g00225 295779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00225 326 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 61 323 - -
Cma06g00225 326 PANTHER - 61 323 - -
Cma06g00225 326 Pfam Myb/SANT-like DNA-binding domain 84 168 IPR044822 -
Cma06g00225 326 Gene3D - 85 146 - -
Cma06g00225 326 MobiDBLite consensus disorder prediction 182 234 - -
Cma06g00225 326 SUPERFAMILY beta-sandwich domain of Sec23/24 31 86 - -
Cma06g00225 326 CDD GT1 83 148 - -
Cma06g00225 326 Coils Coil 270 297 - -
Cma06g00225 326 MobiDBLite consensus disorder prediction 39 66 - -
Cma06g00225 326 ProSiteProfiles Myb-like domain profile. 85 141 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00346 Cma06g00225 CCT
Cma06g00225 Cma14g00061 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00583 Cma-Chr4:2963403 Cma06g00225 Cma-Chr6:1153663 5.32E-41 dispersed
Cma06g00225 Cma-Chr6:1153663 Cma04g01418 Cma-Chr4:7250979 7.62E-14 dispersed
Cma14g00061 Cma-Chr14:265014 Cma06g00225 Cma-Chr6:1153663 7.41E-112 wgd
Cma03g00346 Cma-Chr3:4145982 Cma06g00225 Cma-Chr6:1153663 6.72E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35150 PF13837 Myb_DNA-bind_4 9.60E-19 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00225 - - csv:101211490 393.66