Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g00227 | ATGGAAATGCCATCCACCACTCCCAAAACCGTCGAGGAAATTTTCAAAGATTACGCCGGTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTTTACGCCCTTTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGGGATGGCATGAACAGAAAAGATTGGCTGTCTCTAGTGGCTGTACATAGTGATTCCTGGTTGCTCTCGGTGGCTTTCTATCTTGGATCAAGGCTTAAGCAAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAATGGAAGCCTGTCAAAGAGAAACCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAATCCTAAACTTGCCAAACAGAGTATCGAGGAGGATGTCGACGAACATAGCAAAACCCTCTGTGGTAGCTGTGGTGAAAACAGTACAGATGAGTTCTGGATTGGCTGTGACATATGCGAAAGGTGGTACCACGGAAAGTGCGTAAACATAACACCTGCTAAGGCTGATTGTATCAAACGATACAAATGTTCATCTTGCTGCATGAAGAAATGCAGGCAGTAG | 720 | 45.56 | MEMPSTTPKTVEEIFKDYAGRRAALVRALAHDVDEFYALCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGSRLKQNERKRLFSLMNDLPTVFEVVTEWKPVKEKPSVDSGSRSQGSAKRSNDGQVKSNPKLAKQSIEEDVDEHSKTLCGSCGENSTDEFWIGCDICERWYHGKCVNITPAKADCIKRYKCSSCCMKKCRQ | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1163652 | 1166100 | - | CmaCh06G002270.1 | Cma06g00227 | 295781 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g00227 | 239 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 2 | 2 | 239 | - | - | |
| Cma06g00227 | 239 | ProSiteProfiles | Zinc finger PHD-type profile. | 184 | 235 | IPR019787 | - | |
| Cma06g00227 | 239 | CDD | PHD_AL_plant | 186 | 235 | IPR044104 | - | |
| Cma06g00227 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 233 | IPR013083 | - | |
| Cma06g00227 | 239 | SUPERFAMILY | FYVE/PHD zinc finger | 175 | 236 | IPR011011 | - | |
| Cma06g00227 | 239 | MobiDBLite | consensus disorder prediction | 142 | 177 | - | - | |
| Cma06g00227 | 239 | Pfam | Alfin | 10 | 135 | IPR021998 | GO:0006355|GO:0042393 | |
| Cma06g00227 | 239 | MobiDBLite | consensus disorder prediction | 146 | 170 | - | - | |
| Cma06g00227 | 239 | ProSitePatterns | Zinc finger PHD-type signature. | 187 | 232 | IPR019786 | - | |
| Cma06g00227 | 239 | PANTHER | CPG BINDING PROTEIN | 2 | 239 | IPR045104 | GO:0006355|GO:0042393 | |
| Cma06g00227 | 239 | SMART | PHD_3 | 186 | 233 | IPR001965 | - | |
| Cma06g00227 | 239 | Pfam | PHD-finger | 187 | 233 | IPR019787 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma06g00227 | Cma14g00064 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g00227 | Cma-Chr6:1163652 | Cma08g00788 | Cma-Chr8:4745716 | 1.46E-84 | dispersed | |
| Cma14g00064 | Cma-Chr14:282796 | Cma06g00227 | Cma-Chr6:1163652 | 3.53E-127 | wgd | |
| Cma04g01114 | Cma-Chr4:5756167 | Cma06g00227 | Cma-Chr6:1163652 | 1.42E-113 | wgd | |
| Cma04g00152 | Cma-Chr4:750004 | Cma06g00227 | Cma-Chr6:1163652 | 1.27E-115 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35151 | PF12165 | Alfin | 2.50E-66 | No_clan | Cma | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g00227 | - | - | csv:101211970 | 432.18 |