Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00231 ATGGATTTCGAACAAGAAACGCCGATCTTGCAAAACGGCGCCGTCAAGGGTTCGCTGATCGGTCGGACGGCTCACAACATGTCGTCGTCATCGCTGCGCAGAAAGTCCGATTTGACCCTCGTTTCCAAGGTTCGTTTCGGTTGTCTTAGGCTGTTGCTTGTGAATCTTCAAGAGGTCATTTTGGGAACGAAGATTTGGTTTCTTTTTCCGGCGATTCCGTTGGCTGTGTTGGCCGACTCTCTTGGCTTCGGAAGAGCGTGGGTTTTCGTTCTGAGCTTATTGGGGCTTGCTCCACTTGCGGAACGCCTGAGCTTTCTGACGGAACAAATCTCATATTTCACCGGCCCCACGATTGGTGGGTTATTAAATGCAACATGTGGCAATGCGACGGAGCTAATTATAGCAATATTTGCACTTAGCAAGGATAAAATTGAGTTGGTGAAGTACTCTCTTTTGGGTTCGGTTCTATCAAACCTTCTGGTCGTTCTTGGAACCTCACTTTTCATTAGTGGCATCGTCAATCTTAAAAGACAACAAACCTATGATCAAAGACAAGTTGAGGTGAACTCACACATGTTGTTGTTGGCGCTTTTATGTCATTTGCTTCCGATGTTGTTCCCTTATGTCAAAGGGTCCACTGATGTGGTTGTAGCTAAAGCGCTACGATTGTCTAGAGCAAGTAGTATAGTAATGTTGGTGGCTTATGTAGCTTACTTGATCTTTCAACTATGGACTCACCGTGAATTTTTTGAACCGGATAAGGAACTAGACGTTTATAACGATGACGTTGTGCAAGAAGCACCAACGATTGGAATATGGAGTACAGTGGCTTGGTTGGTAGGCGTTACTATTCTCATTGCTTTGTTGTCGGAGTACGTGGTGGCTACAATTGAGGACGCTTCGGAAAGTTGGGGGCTATCAGTTGCGTTTCTTAGCATGATATTGCTACCATTGGTTGGAAATGCAGCCGAGCACGCAGGAGCTCTCATATTTGCTTATAAGAACAAGTTGGATATAACTTTAGGTGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGGTTCCTTTATGCGTAATTGTCGGTTGGATTATGGGAATTAACATGGATCTTAAATGTAATGTTCTTGAAACTGCCTCCCTCGCTCTTTCAATAATGGCTTCATCATCCATTTTACAGGTAAACTCGACGAATTGCGCCTATCTGTTACTGAACTCCCATTTCGCACTTGATATGCATCTATTTGGCGTTACGGTTTCGGATCGTTATGCGAGTGTTGTCCCTATCCGGGGTGCTTCAATGTCTCCCACTTTTAATCCTAGAGCCACTTCTCCGGCAGGACCTGTTAGTGATGACTACGTGCTGGTTGAGAAATTTTGCCTTGAGAAGTTTCAATTTTCTCCCGGTGACGTGATTGTTTACCGATCCCCTAGTAATTACAAGGAGAAACATGTGAAAAGAGTTATTGCCTTACCAGGAGATTGGGTTGGAACTCGTCAAACATATGACGTTGTAAAGGTTCCAGAAGGACACTGTTGGGTTGAAGGTGATAATTCAGATTGCAGCATGGACTCGAGATCTTTTGGCCCGATACCAATGGGTTTGATTCAAGGTAGGGTGTCACATATTGTATGGCCACCTCAAAGAATTGGTGCTGTTGAGAGGAAATACCCTCAGGGGAGAGTCAAGTCCTACTAA 1701 44.44 MDFEQETPILQNGAVKGSLIGRTAHNMSSSSLRRKSDLTLVSKVRFGCLRLLLVNLQEVILGTKIWFLFPAIPLAVLADSLGFGRAWVFVLSLLGLAPLAERLSFLTEQISYFTGPTIGGLLNATCGNATELIIAIFALSKDKIELVKYSLLGSVLSNLLVVLGTSLFISGIVNLKRQQTYDQRQVEVNSHMLLLALLCHLLPMLFPYVKGSTDVVVAKALRLSRASSIVMLVAYVAYLIFQLWTHREFFEPDKELDVYNDDVVQEAPTIGIWSTVAWLVGVTILIALLSEYVVATIEDASESWGLSVAFLSMILLPLVGNAAEHAGALIFAYKNKLDITLGVALGSATQIAMFVVPLCVIVGWIMGINMDLKCNVLETASLALSIMASSSILQVNSTNCAYLLLNSHFALDMHLFGVTVSDRYASVVPIRGASMSPTFNPRATSPAGPVSDDYVLVEKFCLEKFQFSPGDVIVYRSPSNYKEKHVKRVIALPGDWVGTRQTYDVVKVPEGHCWVEGDNSDCSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVERKYPQGRVKSY 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1173067 1180238 + CmaCh06G002310.1 Cma06g00231 295785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00231 566 Gene3D Umud Fragment, subunit A 423 558 - -
Cma06g00231 566 Pfam Sodium/calcium exchanger protein 86 244 IPR004837 GO:0016021|GO:0055085
Cma06g00231 566 Pfam Sodium/calcium exchanger protein 276 401 IPR004837 GO:0016021|GO:0055085
Cma06g00231 566 Gene3D - 116 254 IPR044880 -
Cma06g00231 566 Gene3D - 256 411 IPR044880 -
Cma06g00231 566 SUPERFAMILY LexA/Signal peptidase 426 554 IPR036286 -
Cma06g00231 566 TIGRFAM cax: calcium/proton exchanger 70 395 IPR004798 GO:0006816|GO:0015369
Cma06g00231 566 Pfam Signal peptidase, peptidase S26 423 500 IPR019533 GO:0004252|GO:0006465
Cma06g00231 566 Pfam Signal peptidase, peptidase S26 506 546 IPR019533 GO:0004252|GO:0006465
Cma06g00231 566 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 16 397 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cma06g00231 566 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 16 397 - -
Cma06g00231 566 TIGRFAM caca2: calcium/proton exchanger 52 399 - -
Cma06g00231 566 CDD S26_SPase_I 426 541 IPR019533 GO:0004252|GO:0006465
Cma06g00231 566 PRINTS Bacterial leader peptidase 1 (S26A) family signature 485 497 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cma06g00231 566 PRINTS Bacterial leader peptidase 1 (S26A) family signature 423 439 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cma06g00231 566 PRINTS Bacterial leader peptidase 1 (S26A) family signature 508 527 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00231 Cma14g00067 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00231 Cma-Chr6:1173067 Cma20g00699 Cma-Chr20:3216684 4.07E-99 dispersed
Cma16g00447 Cma-Chr16:2231904 Cma06g00231 Cma-Chr6:1173067 8.33E-20 transposed
Cma01g00661 Cma-Chr1:3455404 Cma06g00231 Cma-Chr6:1173067 2.83E-107 wgd
Cma03g00349 Cma-Chr3:4186538 Cma06g00231 Cma-Chr6:1173067 2.29E-180 wgd
Cma06g00231 Cma-Chr6:1173067 Cma07g01054 Cma-Chr7:5607832 2.00E-46 wgd
Cma06g00231 Cma-Chr6:1173067 Cma07g01054 Cma-Chr7:5607832 2.00E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00231 K07300 - csv:101213176 560.836