Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00232 ATGGCGAACACTCGCAGCAATGCCAAGCGGATTCTGTGTATAATTTTGTATAATGTCTTTCTGATGTCTATGATATCAGGTTTGGCAAAATACACACCAACCTCTGGAAATGAATCGGATCGCTTGGCTCTACTTGACTTAAAAAGTAAAGTATTCAACGACCCACTTGGAATCATGAGTGCTTGGAACGATTCCATGCATTTTTGCGATTGGGTTGGCGTTTCTTGCGATCAAAGCATCAGAAAAGTAGTGGGTTTGAGCTTGGAAGCTCGAAAGCTGAGTGGTTCGATACCACCTTCTCTGGGTAATCTTACTTATCTCACTGAAATCAGATTGGGAGACAACAACTTGCATGGCCAAATTCCCCAAGAGTTTGGTCGACTGCTACGATTGCGTCATCTCAATTTGTCTTTTAATAACTTCAGTGGTGAGATTCCAGTGAATATAAGTCATTGTACTGAGCTGGTTGTTCTGACAATTGGTGCCAATAGGCTTGAAGGTCAAATTCCATCCCAATTCTTCACGTTAACCAAGTTGGAGCTTCTCGGGTTTGGTGTCAACAATTTGACTGGAACTATCCCACCTTGGATAGGTAATTTTTCTTCAATGCTTCGTTTGTCATTCGCAAAGAACAACTTTCAAGGAGACATTCCCAATGGAGTTGGACGTCTGCATAGATTGAAATTCTTCACAGTTTATGGAAACTACTTCACAGGGTCAGTGCCGCTTTCAATCTATAATATAACTTCTTTGAATTATTTTTCTGTTACTCAGAATCGATTGCAAGTCCTAGTACCACCAAATAATGGATTTTCTCTTCCCAATCTTCAGATCTTTTATGGTGCTATCAACAATTTCAACGGGCCTATTCCCACGTTTTTTGCGAATGCCTCAAGTCTTCAAGAAATAGATCTTTCTGAGAATAATTTCACTGGTAAAATACCTGAGGACTTAGGGAACTTAAACGACTTGGTGGTACTAAATTTTGATGACAATAGACTTGGAACTGGGAAAGTTGGTGACTTAAGTTTTATCAGTTCCTTGACTAATTGTACCAGTCTAAGCATACTGGGTGCTGCTGGGAATCATTTTGGTGGAGTATTGCCTCCATCTATTACCAACTTGTCAGACCAATTCACAAGCCTAACCTTAGGTGAAAATATGTTAAGTGGAGGCCTTCCAGTAGGGATTGAAAACTTGATTAACTTGCAGGTTTTCACTGTGGAAAATAACTACTTGAATGGTAGTGTCCCTCTCAATGTTGGTAAGCTTCAAAACTTGGCCAAATTGTATTTGCAAGGTAACAAACTAAGTGGGCCAATTCCATCATCCATTGGTAACTTGTCCTTGATCATCGAGCTTCGTTTGAATGATAACAAACTTGATGGAAGTATACCACCAAGCTTAGGACGATGCAAAAGACTTCAAGCTCTTGACCTATCTAATAATAAGCTAAGTGGTACCATACCCGAGGAAGTTCTCAGTCTCCCTTCCCTTTCACTCTTTTTGACCTTGGCTCAGAACTCACTTACTGGTCCATTACCAGCTCAAGTGGGAGAATTAATTAGTTTATCTGAGTTGGATCTGTCAGAGAACATGTTATCAGGAAATATTCCCAAAGACCTTGGTAAATGTATGGGCCTGATTCATTTGTTTTTGGATCATAACCTATTTGAGGGAACAATTCCTCAATCTTTGGAAGCTTTGAAAGGTCTAGAAGCACTTGATCTTTCAAGCAACAACTTGTCTGGGCCAATTCCCCAATTTCTTGACCGGTTTCTTGCACTCAAGTATCTCAATCTATCCTATAATAGTCTATGTGGTGGTTTTCAACACTTACATTTACCTTCATGCATGCCTAACCCAACACATTCATCCAACAAGTTTCTGACAAAAAAAGTGTTAGCCTGTACAATATCTACAGTCACATCTGCCATTATTATTTTGAGCATCCTTCTTGTGTGTTTAATGCTTAAGAATTCGAGGAAGAATGCTTCGAATTCATCTTCCAACTCCAAGGATTTTCTATTGCAAGTTTCCTACTTACAACTCAGTAGATCAACTGACGGGTTCTCTAGAGACAATTTGATTGGTTCAGGTAGTTTTGGTTCTGTGTATAAAGGTTCTCTGTCAAATGATGGATTGATTGTTGCAATCAAAGTTGTGAACCTCCAACAAGAAGGTGCTTCCAAAAGTTTTGTTGATGAATGCAAAGCTCTCGCAAACATAAGACATCGAAATCTACTAAAGATCATAACTTCTGTCTCGAGCATCGATGGACAAGGCAATGAGTTTAAAGCTCTAGTTTTCGATTTCATGTCCAATGGAAACTTGGACCGTTGGCTTCACCCTACAAATCAAGGGGAGAATCAAAGAAGGTTGAGTCTTATCCAGAGACTGAATATTGCCATTGATATTGCTTGTGCATTAGATTATCTTCACAATCATTGCGAAACACCTATTGTTCACTGTGATCTAAAGCCTAGCAATGTATTGCTGGACGATGATATGGTGGCCCATGTAGGGGACTTTGGTTTAGCAAGATTCATGTTGGAAGGCTCAAATGATCAATCATCTTTCAGCCAAACCATGTCACTTGCGCTTAAGGGTTCGATCGGGTATATCCCTCCAGAGTATGCCACCGGTGGTAGAGTTTCCAGTGAAGGAGATACTTTCAGCTACGGAATACTACTATTGGAGATGATCATTGGGAAAAGACCCACCGACAAAACGTTTCACAGTGGCGTAGACATTCACATGTTCACTTCAACGGCATTGTCTCATGGAGCGTTGGCCATAATTGACCCTTATTTGCTATATGAAGAAACACGTTGTCAAGAAGAAGAGAAGGAAGACAGAATTCCAGAAATAGCAATAATGATGGGTGAAGATAATCATGGTAGAGAAACTGTACCAAGATGGATGGAGGAATGTGTAGTTTCAATAATGAGAATTGGGTTATCATGCTCTTCAACTGTGCCTCGAGAAAGAACGTCCATGAATATGGTTGTTGACGAATTGCAGAAAATAAGAAGCTGCTATCTCAAGTTTAAGAAGGCACAAACACAAGGATCACTCGATATTTGTTCCCTCAACCTTGAGAGACAAAATGATTGTAGTTCGGCCGCAATGGCTTCCGGAAGTAGCAGCAGGCAGCAGCACCATTAA 3168 40.25 MANTRSNAKRILCIILYNVFLMSMISGLAKYTPTSGNESDRLALLDLKSKVFNDPLGIMSAWNDSMHFCDWVGVSCDQSIRKVVGLSLEARKLSGSIPPSLGNLTYLTEIRLGDNNLHGQIPQEFGRLLRLRHLNLSFNNFSGEIPVNISHCTELVVLTIGANRLEGQIPSQFFTLTKLELLGFGVNNLTGTIPPWIGNFSSMLRLSFAKNNFQGDIPNGVGRLHRLKFFTVYGNYFTGSVPLSIYNITSLNYFSVTQNRLQVLVPPNNGFSLPNLQIFYGAINNFNGPIPTFFANASSLQEIDLSENNFTGKIPEDLGNLNDLVVLNFDDNRLGTGKVGDLSFISSLTNCTSLSILGAAGNHFGGVLPPSITNLSDQFTSLTLGENMLSGGLPVGIENLINLQVFTVENNYLNGSVPLNVGKLQNLAKLYLQGNKLSGPIPSSIGNLSLIIELRLNDNKLDGSIPPSLGRCKRLQALDLSNNKLSGTIPEEVLSLPSLSLFLTLAQNSLTGPLPAQVGELISLSELDLSENMLSGNIPKDLGKCMGLIHLFLDHNLFEGTIPQSLEALKGLEALDLSSNNLSGPIPQFLDRFLALKYLNLSYNSLCGGFQHLHLPSCMPNPTHSSNKFLTKKVLACTISTVTSAIIILSILLVCLMLKNSRKNASNSSSNSKDFLLQVSYLQLSRSTDGFSRDNLIGSGSFGSVYKGSLSNDGLIVAIKVVNLQQEGASKSFVDECKALANIRHRNLLKIITSVSSIDGQGNEFKALVFDFMSNGNLDRWLHPTNQGENQRRLSLIQRLNIAIDIACALDYLHNHCETPIVHCDLKPSNVLLDDDMVAHVGDFGLARFMLEGSNDQSSFSQTMSLALKGSIGYIPPEYATGGRVSSEGDTFSYGILLLEMIIGKRPTDKTFHSGVDIHMFTSTALSHGALAIIDPYLLYEETRCQEEEKEDRIPEIAIMMGEDNHGRETVPRWMEECVVSIMRIGLSCSSTVPRERTSMNMVVDELQKIRSCYLKFKKAQTQGSLDICSLNLERQNDCSSAAMASGSSSRQQHH 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1180602 1184121 - CmaCh06G002320.1 Cma06g00232 295786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00232 1055 Pfam Leucine rich repeat 550 606 IPR001611 GO:0005515
Cma06g00232 1055 Pfam Leucine rich repeat 426 485 IPR001611 GO:0005515
Cma06g00232 1055 SMART LRR_typ_2 424 448 IPR003591 -
Cma06g00232 1055 SMART LRR_typ_2 521 545 IPR003591 -
Cma06g00232 1055 SMART LRR_typ_2 128 152 IPR003591 -
Cma06g00232 1055 SMART LRR_typ_2 569 593 IPR003591 -
Cma06g00232 1055 SMART LRR_typ_2 472 496 IPR003591 -
Cma06g00232 1055 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Cma06g00232 1055 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 34 1011 - -
Cma06g00232 1055 Gene3D Ribonuclease Inhibitor 191 265 IPR032675 -
Cma06g00232 1055 SMART serkin_6 691 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00232 1055 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Cma06g00232 1055 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
Cma06g00232 1055 PRINTS Leucine-rich repeat signature 475 488 - -
Cma06g00232 1055 PRINTS Leucine-rich repeat signature 569 582 - -
Cma06g00232 1055 Gene3D Ribonuclease Inhibitor 37 190 IPR032675 -
Cma06g00232 1055 SUPERFAMILY RNI-like 268 626 - -
Cma06g00232 1055 ProSiteProfiles Protein kinase domain profile. 691 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00232 1055 Gene3D Transferase(Phosphotransferase) domain 1 773 1027 - -
Cma06g00232 1055 Pfam Protein kinase domain 692 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00232 1055 SUPERFAMILY Protein kinase-like (PK-like) 667 1007 IPR011009 -
Cma06g00232 1055 SUPERFAMILY L domain-like 37 334 - -
Cma06g00232 1055 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 34 1011 - -
Cma06g00232 1055 Gene3D Ribonuclease Inhibitor 340 641 IPR032675 -
Cma06g00232 1055 Gene3D Phosphorylase Kinase; domain 1 653 772 - -
Cma06g00232 1055 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515
Cma06g00232 1055 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515
Cma06g00232 1055 Gene3D Ribonuclease Inhibitor 266 339 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00232 Cma-Chr6:1180602 Cma14g00072 Cma-Chr14:331140 0 dispersed
Cma14g00071 Cma-Chr14:328086 Cma06g00232 Cma-Chr6:1180602 1.00E-50 dispersed
Cma14g00070 Cma-Chr14:318810 Cma06g00232 Cma-Chr6:1180602 0 wgd
Cma15g00131 Cma-Chr15:607567 Cma06g00232 Cma-Chr6:1180602 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68622 PF00069 Pkinase 4.60E-40 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00232 - - cpep:111800314 1833.54