Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00236 ATGGCCCCGCAATTGATTTCTGCAATGGAAATGCCTAACTTTAAGCATACATACGCATGTGAGCAGCGGCTTGATGGTCATTGGAAAGCGCGGCACGACATTTTGGCTCTGTTTTGTGGTGAAGAAATGGAAGGGAGAGGCGAAGATGTGAGAGTTGGAGCCAACAGGTTCGAGGAGAGACAGCCGATTGGGACGGCAGCTCAGACCCAAAATGCGGCTAAGGACTACCGAGAGCCGGCACCGGCGCCGCTGGTTGAGGCGGGGGAGTTAAGGTCATGGTCGTTTTACAGAGCTGGAATTGCAGAGTTTGTGGCCACTTTCTTGTTCCTTTATGTGACTATTTTGACAGTAATGGGAGTTGCCAAATCTCCCAATAAGTGCAACACTGTTGGCGTCCAAGGCATTGCTTGGGCCTTTGGCGGCATGATCTTTGCTCTTGTTTATTGCACCGCTGGTATTTCAGGTGGTCACATAAACCCAGCCGTCACATTTGGGCTATTACTGGCGAGGAAACTCTCTCTAACAAGGGCAATCTTTTACATAATAATGCAGTGCCTAGGCGCCATCTCGGGTGCCGCAGTCGTGAAAGCCTTCGAAAACGCCCAATTCGGAACCGTCGGCGGTGGAGCTAACACCATCAATGCAGGCTATTCCAAGACAGCCGGCCTCGGAGCTGAAATCATGGGCACATTTCTTCTTGTTTACACTGTCTTCTCAGCCACCGATGCAAAGCGAAACGCTCGAGATTCCCATGTTCCTATGTTGGCTCCTTTGCCGATTGGGTTCGCGGTGTTCTTAGTGCATTTGGCCACCATTCCTATCACCGGAACTGGCATTAATCCGGCCAGGAGCCTCGGCGCCGCCCTCGTTTACAACCGCCACCAAGCCTGGCATGACCATTGGGTGTTCTGGGCAGGGCCGTTGATCGGAGCAGCACTGGCGGCTCTCTACCATCAGACGGTGATCAGAGCAATACCATTCAAGTCCAGATGA 993 52.37 MAPQLISAMEMPNFKHTYACEQRLDGHWKARHDILALFCGEEMEGRGEDVRVGANRFEERQPIGTAAQTQNAAKDYREPAPAPLVEAGELRSWSFYRAGIAEFVATFLFLYVTILTVMGVAKSPNKCNTVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAIFYIIMQCLGAISGAAVVKAFENAQFGTVGGGANTINAGYSKTAGLGAEIMGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAALVYNRHQAWHDHWVFWAGPLIGAALAALYHQTVIRAIPFKSR 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1199027 1204355 + CmaCh06G002360.1 Cma06g00236 295790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00236 330 Pfam Major intrinsic protein 89 318 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00236 330 CDD MIP 97 321 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00236 330 SUPERFAMILY Aquaporin-like 89 322 IPR023271 -
Cma06g00236 330 TIGRFAM MIP: MIP family channel proteins 101 318 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00236 330 ProSitePatterns MIP family signature. 157 165 IPR022357 -
Cma06g00236 330 Gene3D Glycerol uptake facilitator protein. 82 328 IPR023271 -
Cma06g00236 330 PRINTS Major intrinsic protein family signature 176 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00236 330 PRINTS Major intrinsic protein family signature 225 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00236 330 PRINTS Major intrinsic protein family signature 139 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00236 330 PRINTS Major intrinsic protein family signature 301 321 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00236 330 PRINTS Major intrinsic protein family signature 261 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00236 330 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00236 330 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 43 330 IPR034294 -
Cma06g00236 330 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 43 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00236 Cma-Chr6:1199027 Cma15g01235 Cma-Chr15:7826897 9.80E-174 dispersed
Cma04g01127 Cma-Chr4:5823126 Cma06g00236 Cma-Chr6:1199027 5.75E-172 wgd
Cma04g00163 Cma-Chr4:804572 Cma06g00236 Cma-Chr6:1199027 7.82E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00236 K09872 - cpap:110807714 490.73