Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00248 ATGAATCCCTCCACCGCCGCCGCACAACCACCACCTCCTCCTCCTCCTTCCTCCGCTGTCGCCGCCCCCTGTCCACGACACCCTCAAGAGCATTTCGCCCCTTTCTGCCAATTATGCCTCTGCGAGCGTCTCTCTCTAATCGACTCATCTTCTTCCTCTTCCTCCTCTTCCCGGAAACCCCCTTCCACTGCTGCCTCTGCTCTTAAGTCCCTTTTCCGGCCCGGTCCTCCTACTACTCGTCCCTCTTCTTTCTTCCCTGAGCTTCGTCGGACTAAATCCTTCTCTGCTTCTAAGAACGAACCCTTTTCTGCCCTTTCTGAGCCCCACAGGAAATCTTGCGACGTTCGTCTTCGTAACACTCTCTGCTCTTTCTTCTCCCAGGACGCCTCTGCTTCTTCTTCTTCTAGACCTCTCCCTGTTCCTGCTTTTGAAATTGCTTCCGAGAGTAAGAATTTGGAGGACGAGCCGAGTTCTTCTTCCTGTCTTGAACCGGAACCCAAGAGCGAAGGGGAAATTAGGGTTTCTGAACTGCCCATTGTGGTGGATGTTGTGATCGAGAACGGAGTTCAGGAAATCGTCGAAGAAGAACAACTTCAGGTTGAATTCGAGCGAGAATCGGTGCAACTCCAAGAGGATTTCAAAACCATGAAGGATCATATAGATCTTGATTCGCACACGAAGAAGCCCTCCGGAAGGGATTTGAAGGAGATTGCCGGGAGCTTCTTGTCGGCGGCTTCGGTCTTCAGCAAGAAGCTGCAGAAGTGGAGGGATAAGCAGAAGGGGAAGAAGCAGAGAAGCGGCGCTGGATCTACGACATTGCCGGTGGAGAAGCCAATCGGACGCCATTTCAGAGAAACCCAGTCGGAAATTGCCGATTACGGCTTCGGCCGACGATCCTGCGATATTGATCCGAGATTCTCTCTCGACGCCGGGCGAATGTCCTTCGACGATCCCCGCTATTCTTTCGACGAACCCAGGGCTTCATGGGACGGGTATTTGATAAGCAGAACGTTCCCGAAAATGCCTACCATGCTTTCCGTCGTTGAAGATGCTCCTATCAGTGTCTTCCGTTCCGATACTCAAATTCCCGTCGAAGACTCCCTGAGTTCAACCAATGAAGAAGAGAATATCCCCGGAGGGACATCGCAGACCCGGGATTACTATTTAGACTCCTCTTCCCGTCGGCGGAAGAGCCTCGATCGGTCCAACTCCATAAGAAAGGCCGCCGCGGCGGTGGTAGCAGAGATTGATGAAATGAAATCTGTTTCAAACGCTAAAGTTTCCCCTGCAACTACAGATATTAGCCATGGCCCAAAACTATCCATCCCAGATAGAGACTCGAACTCCAATTCAGTGCGAGACGACTGCTCCGGGACCTTTGATATGGGATTTAACGACACAGCGTCAGTGATTGCGACAGGGAATCGGAAAGAGGAGTCAAAAAAGTCCCGCCGGTGGGGGAAGGGTTGGAGCATATGGGGATTGATTAACCGGCGTGGAGGAAACAAAGATGATGAGGAAGACGTGAGCAGACGCAATGGTGTGGAGCGGTCGTTTTCAGGGTCGTGGCCGGAGTTGCGAGGCGAACAGAGTATGGATGTGAAAGGAGGATTCAACCCCAAAATGTTTAGGAGTAACAGTAGTGTGAGTTGGAGGAGTGCAAGTATGGTGGGTGGATCTTTCAGTAGCAGTTCAAGGAAAAGCAACGCAGATTGTAATGGGAATGGGAAGAAGAAGAAAGAACAGGAGCAGCAGCAGCAGCAGCCAGTGTTGGTGAGGAACCACAGTGCTCGACATTCTCTGACAAATGTCGACAATGGTCTTCTCCGATTCTACATGACGCCGATGAAGGACAGCCGGAGAGGCTCTGCCGCCGGGAAGGTGAAACCCAATCAAGCACACTCCATTGCTAGAAGTGTTCTTCGACTGTATTAA 1935 51.68 MNPSTAAAQPPPPPPPSSAVAAPCPRHPQEHFAPFCQLCLCERLSLIDSSSSSSSSSRKPPSTAASALKSLFRPGPPTTRPSSFFPELRRTKSFSASKNEPFSALSEPHRKSCDVRLRNTLCSFFSQDASASSSSRPLPVPAFEIASESKNLEDEPSSSSCLEPEPKSEGEIRVSELPIVVDVVIENGVQEIVEEEQLQVEFERESVQLQEDFKTMKDHIDLDSHTKKPSGRDLKEIAGSFLSAASVFSKKLQKWRDKQKGKKQRSGAGSTTLPVEKPIGRHFRETQSEIADYGFGRRSCDIDPRFSLDAGRMSFDDPRYSFDEPRASWDGYLISRTFPKMPTMLSVVEDAPISVFRSDTQIPVEDSLSSTNEEENIPGGTSQTRDYYLDSSSRRRKSLDRSNSIRKAAAAVVAEIDEMKSVSNAKVSPATTDISHGPKLSIPDRDSNSNSVRDDCSGTFDMGFNDTASVIATGNRKEESKKSRRWGKGWSIWGLINRRGGNKDDEEDVSRRNGVERSFSGSWPELRGEQSMDVKGGFNPKMFRSNSSVSWRSASMVGGSFSSSSRKSNADCNGNGKKKKEQEQQQQQPVLVRNHSARHSLTNVDNGLLRFYMTPMKDSRRGSAAGKVKPNQAHSIARSVLRLY 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1240207 1242141 - CmaCh06G002480.1 Cma06g00248 295802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00248 644 MobiDBLite consensus disorder prediction 364 401 - -
Cma06g00248 644 MobiDBLite consensus disorder prediction 554 599 - -
Cma06g00248 644 MobiDBLite consensus disorder prediction 148 169 - -
Cma06g00248 644 MobiDBLite consensus disorder prediction 49 64 - -
Cma06g00248 644 MobiDBLite consensus disorder prediction 585 599 - -
Cma06g00248 644 MobiDBLite consensus disorder prediction 499 514 - -
Cma06g00248 644 MobiDBLite consensus disorder prediction 554 571 - -
Cma06g00248 644 Pfam Protein of unknown function (DUF740) 11 621 IPR008004 -
Cma06g00248 644 MobiDBLite consensus disorder prediction 1 24 - -
Cma06g00248 644 MobiDBLite consensus disorder prediction 422 454 - -
Cma06g00248 644 MobiDBLite consensus disorder prediction 49 89 - -
Cma06g00248 644 MobiDBLite consensus disorder prediction 364 388 - -
Cma06g00248 644 MobiDBLite consensus disorder prediction 253 275 - -
Cma06g00248 644 MobiDBLite consensus disorder prediction 1 22 - -
Cma06g00248 644 MobiDBLite consensus disorder prediction 497 539 - -
Cma06g00248 644 PANTHER PROTEIN: UPF0503-LIKE PROTEIN, PUTATIVE (DUF740)-RELATED 1 644 IPR008004 -
Cma06g00248 644 PANTHER PROTEIN: UPF0503-LIKE PROTEIN, PUTATIVE (DUF740)-RELATED 1 644 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00248 Cma07g01046 CCT
Cma03g00372 Cma06g00248 CCT
Cma06g00248 Cma14g00086 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00086 Cma-Chr14:394474 Cma06g00248 Cma-Chr6:1240207 0 wgd
Cma02g00765 Cma-Chr2:4595518 Cma06g00248 Cma-Chr6:1240207 5.78E-108 wgd
Cma20g00366 Cma-Chr20:1768788 Cma06g00248 Cma-Chr6:1240207 6.23E-101 wgd
Cma03g00372 Cma-Chr3:4287670 Cma06g00248 Cma-Chr6:1240207 0 wgd
Cma06g00248 Cma-Chr6:1240207 Cma07g01046 Cma-Chr7:5522385 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00248 - - csv:101216300 854.358