Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00254 ATGAAGTGCGGGCGGTCGATTGTTCTGTTCACTGATATATCGGAATCGGAGAAGCCCTTCTTCCATTTGGGAGCAAAGAAGCGAAAGACGAACGGGGACTGTGCCGAGGAAGCGAACCAGAAAGTTTCTGCCTCGCCGAGGTGGAGGGGGATTCTTGAAGGGAGAAATATGCTTCAAATCCGGCTTAGCAAAGTTCCACAGGCGGAAGGTGGCGCTGGAGCAGTGAAGCCCTTGCAAGCGGAGACTGTGACGGTCGCATGCCCTGACCACCTTATCCTTGCTGATCTTCCTGTGGCAAAGGGCATTGGTGCAGCTACTGCTGCTTCCATTGTTAAGTCTGTTGGTCGCAGATCTCGCCGTCAGCTTGGAGAACGAGTTCATTTTTGTGTCAGATGCGATTTTCCCATTGCAGTTTATGGTCGCTTGAGCCCATGTGAGCATGTGTTCTGTCTCGATTGTGCAAGAAGCGATTCTATATGCTACCTTTGTGATGACCGTATCCAGAAGATTCAAACTATAAAATTGATGGAGGGGATCTTCATTTGTGCAGCCCCACATTGTCTCAAGTCTTTTCTTAAGAGGACTGAATTTGAATCTCATATACAAGAGAGTCATGCTGAACTTCTTAAGCCAAATGCAGAAATGGAAGATGGAAACGAAATTGAGGCTCTTAGTGCCAAACAATCTACAGCTTCTGAATCCACTGTTCGAGGTCCATCGAGACCAATCATATCTCCAAGTTCCAATTCCCAGGCTCAAGAACATGACGAAAAATTTCATCGTCAACAATCTAGAGACCAACCCACGTCTGGCATGCAGCAACAAGACAGCGGTGGTCATTCACAAGGCTTTGATCGACATGGCCCTCATGGCCGTTTTCCCCCACAAAACTTTGACGTACAGGGTCCTCCACATCAGGAATCCAGTCAATTTTCAGAGAAACAGCAGGGAATTCTGGCCGACCCTCCATACTCCCAGTACCCTCCTTTGCAATCAATTCCACCACCAAATTACGTGGTTCCAGCTAACTCAAATCCAATGTTGAGTCCCCCTCTACCGTTCGGTTTTCCTCCGTTTCCAACTGAGGGAGCACAACAATATTACAGTACACCCTATGAAGTGCCACGACAAGATACCGCAGCTGAGACTGGATCCGAGCAAGGGTCACTGCTAGGCTTTCCACCAGGAGCAGCAGGAGGAATGAACTTCTCAGCGACTTATCCTCAACCTTGGAATACTGGACAAGCTGGCGTTCCTTATGAGCATGCTGCTGGAGGTCAAGGAATGCCTGATGCTTTTGCTAATGCACCTGATTCTCAAGTAAATCATGGATTTTACCAAGGAGATTATAGACGCAGCCCTGGAGGCTTGCCTGTGAATTCTTCTGTCTCGTCAATGGCCAACAAGAGCATGGACCTGGGACATTATGGTAATGCGATGGACTTGAAGAATGGTAGAGGTATATTGGCACCACAGCCGCCTCTAGCACAACTTCCTCTGCCTCCACCACGCCCACCGTACTTGTCGCATAATAAGCATGGTAAGTTTCATTCAGGAGATACGGATCATGATGGACAAGGCCATGGATGGCAGAATGATAGCCATAGCCGAGATAGCTTTGGAAGTGGCCAAGACTGA 1638 48.41 MKCGRSIVLFTDISESEKPFFHLGAKKRKTNGDCAEEANQKVSASPRWRGILEGRNMLQIRLSKVPQAEGGAGAVKPLQAETVTVACPDHLILADLPVAKGIGAATAASIVKSVGRRSRRQLGERVHFCVRCDFPIAVYGRLSPCEHVFCLDCARSDSICYLCDDRIQKIQTIKLMEGIFICAAPHCLKSFLKRTEFESHIQESHAELLKPNAEMEDGNEIEALSAKQSTASESTVRGPSRPIISPSSNSQAQEHDEKFHRQQSRDQPTSGMQQQDSGGHSQGFDRHGPHGRFPPQNFDVQGPPHQESSQFSEKQQGILADPPYSQYPPLQSIPPPNYVVPANSNPMLSPPLPFGFPPFPTEGAQQYYSTPYEVPRQDTAAETGSEQGSLLGFPPGAAGGMNFSATYPQPWNTGQAGVPYEHAAGGQGMPDAFANAPDSQVNHGFYQGDYRRSPGGLPVNSSVSSMANKSMDLGHYGNAMDLKNGRGILAPQPPLAQLPLPPPRPPYLSHNKHGKFHSGDTDHDGQGHGWQNDSHSRDSFGSGQD 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1263751 1267005 - CmaCh06G002540.1 Cma06g00254 295808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00254 545 MobiDBLite consensus disorder prediction 265 281 - -
Cma06g00254 545 ProSitePatterns Zinc finger C2H2 type domain signature. 182 205 IPR013087 -
Cma06g00254 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 180 IPR013083 -
Cma06g00254 545 MobiDBLite consensus disorder prediction 513 531 - -
Cma06g00254 545 MobiDBLite consensus disorder prediction 494 508 - -
Cma06g00254 545 MobiDBLite consensus disorder prediction 434 463 - -
Cma06g00254 545 Coils Coil 543 545 - -
Cma06g00254 545 MobiDBLite consensus disorder prediction 223 252 - -
Cma06g00254 545 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 57 511 - -
Cma06g00254 545 MobiDBLite consensus disorder prediction 222 314 - -
Cma06g00254 545 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 57 511 IPR040383 GO:0016567|GO:0061630
Cma06g00254 545 CDD RING-HC_HAKAI_like 127 163 IPR040380 -
Cma06g00254 545 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 206 IPR013087 -
Cma06g00254 545 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Cma06g00254 545 MobiDBLite consensus disorder prediction 484 545 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00254 Cma14g00091 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00091 Cma-Chr14:409018 Cma06g00254 Cma-Chr6:1263751 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00254 K15685 - csv:101220422 759.214