Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g00271 | ATGGCTGACGGCATTGAATCCTTCGACCATGTCCCTCAACAGAGCCGCCGTGATAAGCTCCGAGAACAACTCGACCGCTCCTCTTTCCTCCCTTTTTACGACCCCTCATTAATTTCCTCCTCCGACATCCTCTCTACCGCCGCCGCCGCCGCCGCCAACAATCCTCTTTTCCAATTCCACCACCCCTTCTTCGACACACAAATTCCCTCGTCCCTCTTGCCCGATTCCAACAACCCTGTTCTGTTAAACCATTGCTACGCCGCCTTCAAGCCCGGACCCCTCTCTTTATCTCTCTCCTCTCAGCCCTATCTGAGTACTGTTAATGTTCCTCTTGGACCTTTCACTGGGTACGCTTCTATTTTGAAAGGGTCGAGGTTTTTGGAGCCTGCCCAGCAGTTGTTGGAGGAGCTCTGTGATGTTGTTGGCCTTCGACGGACTCAATCCTCTTCGGCCACTTCCGACAGTTTGAGTGACTGTGGAGTTGTTCATCATTCCTTTACTTTTAATAAATCTACCCTTGTTTCCATGCTCGACGAGGTTTATCGTAAGTATAAGCAATACTATCAACAAATCCAGGAAGTGATGACATCGTTCGAGTACATCTCCGGGCTCGGGAATGCAGCGCCCTATGCCAACCAAGCTATTAAAGCCATGTACAAGCATTTCCAAAGCTTGAAAAATGGAATTCTTGAACAACTTAAATTCAATAAAAGGACTCATGGTGGTGACTACAGTCAAAGATCGGTTCAAAACCCGGGATTTCTTGACCTTCAGCCTGTTTGGCGACCGCAACGAGGACTACCTGAACAAGCAGTGACGGTTCTTCGTGGTTGGTTGTTCGATCATTTTTTGCATCCTTATCCTTCTGATACCGACAAGCTTATGTTGGCTAAACAGACTGGTCTGTCTCGTAGTCAGGTCTCTAACTGGTTCATTAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTTGAAGAAATATACAATCTTGAAACAAAGCAAACACAGAAGAATTGCCATAGAGAAGAAGATCGAAACGCGCATCCTCCATCGCGAAACGAACCTCATGACATACCATTGGGAATTCAAGATGAGGCCTCTAACATATGTTACAACTTGTCAAGCCATCCCCATATGGCGAGCAACAACAACAACGGCGGAGTTTCCTTAACTCTTGGCCTTCACCAGAACAATGGCATTGGCGGCTTCCGTGTTGGGTACGTAATGGGTGGACATTTTGGTAGAGATGTTGTTGGAACTCAGCTGTTACATGACTTCGTAGGCCGAAATTCATTGTGGTTGTAA | 1302 | 47.08 | MADGIESFDHVPQQSRRDKLREQLDRSSFLPFYDPSLISSSDILSTAAAAAANNPLFQFHHPFFDTQIPSSLLPDSNNPVLLNHCYAAFKPGPLSLSLSSQPYLSTVNVPLGPFTGYASILKGSRFLEPAQQLLEELCDVVGLRRTQSSSATSDSLSDCGVVHHSFTFNKSTLVSMLDEVYRKYKQYYQQIQEVMTSFEYISGLGNAAPYANQAIKAMYKHFQSLKNGILEQLKFNKRTHGGDYSQRSVQNPGFLDLQPVWRPQRGLPEQAVTVLRGWLFDHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYNLETKQTQKNCHREEDRNAHPPSRNEPHDIPLGIQDEASNICYNLSSHPHMASNNNNGGVSLTLGLHQNNGIGGFRVGYVMGGHFGRDVVGTQLLHDFVGRNSLWL | 433 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1331793 | 1334868 | + | CmaCh06G002710.1 | Cma06g00271 | 295825 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g00271 | 433 | SUPERFAMILY | Homeodomain-like | 263 | 328 | IPR009057 | - | |
| Cma06g00271 | 433 | CDD | homeodomain | 261 | 322 | IPR001356 | GO:0003677 | |
| Cma06g00271 | 433 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cma06g00271 | 433 | ProSiteProfiles | 'Homeobox' domain profile. | 258 | 321 | IPR001356 | GO:0003677 | |
| Cma06g00271 | 433 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 9 | 97 | 399 | - | - | |
| Cma06g00271 | 433 | MobiDBLite | consensus disorder prediction | 333 | 356 | - | - | |
| Cma06g00271 | 433 | Pfam | Associated with HOX | 120 | 229 | IPR006563 | - | |
| Cma06g00271 | 433 | SMART | HOX_1 | 261 | 325 | IPR001356 | GO:0003677 | |
| Cma06g00271 | 433 | Pfam | Homeobox KN domain | 278 | 317 | IPR008422 | GO:0003677|GO:0006355 | |
| Cma06g00271 | 433 | Gene3D | - | 264 | 326 | - | - | |
| Cma06g00271 | 433 | SMART | prehox3 | 115 | 231 | IPR006563 | - | |
| Cma06g00271 | 433 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 97 | 399 | - | - | |
| Cma06g00271 | 433 | MobiDBLite | consensus disorder prediction | 334 | 351 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma03g00397 | Cma06g00271 | CCT | |
| Cma03g00397 | Cma06g00271 | ECH | |
| Cma06g00271 | Cma14g00107 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g00271 | Cma-Chr6:1331793 | Cma13g00244 | Cma-Chr13:1997873 | 5.01E-71 | dispersed | |
| Cma14g00107 | Cma-Chr14:468152 | Cma06g00271 | Cma-Chr6:1331793 | 0 | wgd | |
| Cma03g00397 | Cma-Chr3:4419767 | Cma06g00271 | Cma-Chr6:1331793 | 1.01E-98 | wgd | |
| Cma06g00271 | Cma-Chr6:1331793 | Cma07g01019 | Cma-Chr7:5289253 | 3.71E-56 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35153 | PF07526 | POX | 9.00E-28 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g00271 | - | - | cmax:111470021 | 830.861 |