Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00283 ATGGGTTCTCCCAATTTCATAACCTTTTTCCTTTGCCATTATTTTCTGTTTCTTCACTATTCTCAAGCTGTTCTTCATCCTCCCTTTGACAACAACACTGATCAGGAAGCTCTGCTTTCGTTCAAATCTTCAGTCATTGACCCACATGGTGTGTTGGATTCTTGGCATCCAAACAGTTCCTTCTGCAAATGGCTTGGTGTTCTCTGCAACCTGAAAAGGTGTCGAGTCATTAGTCTCCGACTTGAACATCGCTCACTAGCTGGACCGATTTCTCCTCACCTCACCAACCTTTCGTTTCTTCGCCGTCTTGAGCTGCAGGGGAATAACTTCTCCGGGAGAATTCCACTGGAGATTCATCACCTCTTTCGGTTGCGAGTTTTGAACTTGAGTTCCAACAGCCTTCATGGAACCATTCCACCATCTTTGAGCCATTGTTCGATGATTCGTGTCGTTGATGTTTTCGGGAATGAGCTTCATGGTAGAATTCCATCAGAGCTAGGTAGCTTATCAGCACTTTACGATTTGAATCTCGGCCAAAATAAATTCTCAGGAACCATCCCTTCTTCATTTGGTAATCTATCTTCTCTCAACAAGTTGAATGTAGTTACAAATAATTTAGAGGGTCCAATCCCACATGAACTAGGTCGTCTCAATCGACTCTGGTATTTACATCTAGGAGATAACAAAATCTCTGGCAGTTTTCCAGCCCAACTGATGAACATTTCTTCCTTGAATATGTTTTCTTTACCAAAGAATCAGTTTTCTGGTGAACTTCCATCTAATTTGTTCATAGAACTAAGTAATCTTTCCATTGCGTTCTTTGGAGGAAACATGTTTGATGGCCAAATCCCTGAATCACTTTCTAATGCCTCCAAACTCGAAAGATTTGACCTATCAGTGAACCAAATTTCAGGAGAAATTCCTTCATTTTGGAAGCTAGAAAGGATTCGGGAACTGAATCTTGAAATGAACTACCTAACAAGCAATGGAAAGGAAGGCCTCAACTTTATTACTTCACTTACCAATTCAACTCACCTGAAAATGTTGTCAGTGGCCACAAATTTACTCACGGGACAGCTTCCTCGGTCCATTGGAAACTTGTCAAATCATTGTTCTAAGCTTCTTATGGCAGAAAACCAGTTTAGTGGAAGCATCCCTAGTGAAATAGGAAACTTGGGTGGCCTCATTTCTGTATCTTTACCTTCAAATTCCTTCACAGGTAACATTCCTTCTTCATTATCAAACCTCAAGAACTTGCAGGTGCTATCATTAGAATCAAATATTCTGTCAGGCTCCATCCCTGAAACGTTTGGTAATCTAAGTGAGCTCTCTCTGTTTTTAGTCAATGATAACAAATTAAGTGGAAAAATTCCTCTCAGTTTAACAAACTGTGAGCGTCTACTCGTATTTGATCTATCACAAAATGGGTTGAGCGGGAACTTACCAAAGGAGATCTTTAGCTTCCCAAATCTTTTAGAATTCAATGTTTCAGTCAACAACTTGACAGGTTCTTTGCCTTCTGAAATTGACAAGCTATTGATGGTTCAATTATTCGATGTCGCCACAAATCAACTCTCCGGAGCCATTCCAGACACCATAGGAAACTTCTTGAATCTTGAGTACTTGATCATGTCTGGCAATTCTTTCGAAGGACCAATTCCCAGTTCATTGGCCAATTTGGAAGTGGTCACTCTCGTAGACATTTCATCAAACAGGTTGTCTGCAACAATCCCTTCTCTTGATGGCCTCCAATACCTCCAATACTTGAACCTCTCTTCCAATCAACTACAAGGAGAAGTACCTAAAAGTGGCATATTTCTCAACATATCAGCCGTATTTCTATCCGACAACCCCGAGCTTTGCGGCGGCATTGTTGAACTTGGACTACCAAAATGCTCTGTTGGCTCAACTGGCAAAAGAAAAATTGGGAAATTAATTGCAGGAGTTGTTGTAGGAGGAATTGGTGCATGCCTCGCAATTGCTACGGCTTTCTTGTTCTGGACAAGAAGGAAACCAGTGGCGAAAATGGACACAGATTTGAGTTTATTGGAAGGGGTTCATAGGGCATATTCATACTACGAATTGAAACATGCGACGGGGGATTTCGCCCATGAAAATCTAATCGGAAAGGGGAGCTTCGGATCCGTTTACAAAGGCGTAACGAGAGACGGAAACTCAATCGCCATTAAAGTAATCGATTTAGACCATCGAGGTGGAATGAAAGGTTTTGTTAACGAATGTGAAGTCCTGAGAAACATAAGGCATCGGAACCTGGTGAAGATCCTGAGTGCTTGTTCCAGTTTGGATTTCAAAGCATTGGTTCTGGAATTTATGCCGAATGGAAACTTGGAAACCTGGCTTCACGGAAGAGGAGATGGGCGATCAGAGCGATGGCTGCCTCTGAAACAGAGAATAAACATAGCGCTAGACGTAGCGGCTGCAATGGAGTATCTTCACGATGGATTCGAAACTCCTGTAGTTCATTGCGATCTGAAGCCGAGCAATGTTCTTCTGGATGTAGACATGACCGCCCATGTTGCTGATTTTGGGCTGGCAAGATTTCTTCAAGATCAAGGCGATTCTACGAGCCATAGTCAGAGCATTAGCAGTGGGCTAAAAGGTTCCATCGGCTACATTCCACCGGAGTACGGGTATGGCGTTGGAATATCGACAAAGGGAGACGTTTATAGCTATGGAATTCTTCTTTTGGAAATGCTAACCCAAAGAAGCCCAACAGATCAGACATTCCATGAAGAAGCAAACCTATCAAGATGGGTAGAAGCTGCTATTCCAAACTCGGTGATCGATATTCTGGATGAAAGATTGAAAGAACTTTGTTTTCACATGAACACAATGGATCATCTCATTAATATTTTAAATCTGGGTTTGAAATGCACAAATGAGTACCCAAATGAAAGACCCGAAATGAAAGAGGTGTACACAACAATCAAAAGGCGTTCAATTCAACAAAATCTGCCTGCCATGGCACTACTTATCCCCCAACCTTCACCAAATTTCTTCAGAATTCGCACCATACCCTTCTACATCGCAATCCTTACCTTTCCCATGGCCCAGCTCTCTCTCCTCTGTTTCTTCTTTTTCCTCTACTTCGCCGCCCCCGCCGCGTCTCAGCAGCTCTACTTCGCCGGATTCCACGACGCCGCCGCTGCAGCCAACTTATCTCTCACGGACATCGCCAAGATCGAGCCGAATGGAATCTTAAAGCTCACGAACGACACCAGTCGACTACAGGGTCATGCCTTTTATACCTCCCCTGTTCGCTTCAAAAACTCCTCCGACGGCAAAGCTTTTTCCTTCTCCACCGCTTTCGCCATCGCCATCGTCCCCGAGTATCCAACCCTCGGTGGTCATGGCCTTGCCTTCACAATCGCACCCTCCAAAACCCTCCGTGGATTACCCAGTCAGTATTTAGGCCTTCTCAATGCCACCGATGTCGGAAATTTCTCGAACCATCTCTTGGCTGTCGAGTTCGACACCGTTCAAGATTTCGAGTTTGGCGACATCAACGACAACCATGTCGGAATCAATCTCAATAATATGGTCTCTAATGACTCTACCACAGCTTCGTATTTCGTCGACGACGGACCCATCAAACAAAACTTAACCCTAAAAAGTGGGAGGCCAGTTCAAGCGTGGATCGATTATGATTCCTCTGTAAATTCCCTCACCGTCGCGCTTTCACCGTTTTCCACCAAACCCAAGAAGCCGATTCTGTCGTTTAATGTAGATCTCTCTCCCATTCTTCACGAGTTTATGTATGTTGGGTTCTCTGCCTCGACAGGGCTTCTTGCGAGCTCTCACTATGTGTTGGGATGGAGTTTCAGTATGAACGGCGCCGCCCAGTCTCTGGATCTTTCCTCTTTGCCGTCTGTTCCAGGTCCGAAGAAGAATCACACTGGTTTCACGATTGGGGTTTCCATTACGGCTTTTTTAATCGTGATAATAGCGATTTGTGTTGCTGTTTTCATCATTTGGAAGATAAAAACCGCGGACATAATCGAATCATGGGAGCTCGAAATTGGCCCTCATCGGTACTCTTACAAGGAGCTCAAGCAAGCGACTAAGCGATTTAGGGATAAAGAGCTTCTGGGTCGCGGTGGATTTGGGAAGGTTTATAAAGGGACTTTACCAAATACGAAAACCCAAGTGGCTGTTAAGCGAATTTCTCATGAATCGAAACAGGGTTTGAGGGAATTTGTGTCGGAAATTGCTAGTATTGGTCGGCTTCGACACCGGAACTTGGTTCAGTTACTGGGATGGTGTCGCCGCCGTGGCGATCTGCTTCTGGTTTATGAGTTTATGGCTAATGGAAGCTTGGATAACTACATTTTTGACGAGCCGGATGTGATTTTGAGCTGGAATCAGAGGTTTCGGATCATAAAGGGCGTTGCCTCCGGTCTTTTATACTTGCATGAAGGCTACGAACAGGTGGTTCTTCATAGAGATGTGAAGGCCAGTAATGTTCTGCTCGACAGCGAGATGAACGGGAAGCTCGGCGATTTCGGCCTTGCGCGGCTGTATGAGCACGGGGCGAATCCAAGCACTACGCGGGTCGTCGGAACACTGGGATATCTGGCGCCAGAGCTTCCCAGAACAGGGAAGTCCACCACAAGCTCAGATGTATATGCATTTGGCGCACTGCTACTGGAAGTGGCCTGCGGACGGCGGCCAATCGACCCGAAATCGTCGTCGGAGGAATTGGTGCTGGTGGATTGGGTATGGGAGAATTACAGAGAAGGGAGATTACTGGAAGTAATGGATCCAAAATTGAAAGGGGATTTCAACGAGGTTGAAGCTGTTATAATTCTGAAATTGGGGTTGTTCTGTTCGAACGATACGGCGGCGGCACGGCCGAGTATGAGGCAGGTGGTGCGGTTTTTGGAGGGAGAAATTGGCGTTCCCGACGAGATTTCAGCGCCGAGAGTGGTGGAAGGAGGGAAGAACAGTGAAGGATATGGATATGAGTTTTGCTTCTATTTCCACGTCTCTTTCGCTTCTAAGTGGCAGAGACTGAGTTGTAAACAGCAAAAACAGGTCCAAGTGAGCAAAAAACAGATCAAACAGCTCCAAGGCAGCCAAAATCAAGTCAAAAAATTACGTTTTTCTTTGTTTGATCTGTAA 5142 44.85 MGSPNFITFFLCHYFLFLHYSQAVLHPPFDNNTDQEALLSFKSSVIDPHGVLDSWHPNSSFCKWLGVLCNLKRCRVISLRLEHRSLAGPISPHLTNLSFLRRLELQGNNFSGRIPLEIHHLFRLRVLNLSSNSLHGTIPPSLSHCSMIRVVDVFGNELHGRIPSELGSLSALYDLNLGQNKFSGTIPSSFGNLSSLNKLNVVTNNLEGPIPHELGRLNRLWYLHLGDNKISGSFPAQLMNISSLNMFSLPKNQFSGELPSNLFIELSNLSIAFFGGNMFDGQIPESLSNASKLERFDLSVNQISGEIPSFWKLERIRELNLEMNYLTSNGKEGLNFITSLTNSTHLKMLSVATNLLTGQLPRSIGNLSNHCSKLLMAENQFSGSIPSEIGNLGGLISVSLPSNSFTGNIPSSLSNLKNLQVLSLESNILSGSIPETFGNLSELSLFLVNDNKLSGKIPLSLTNCERLLVFDLSQNGLSGNLPKEIFSFPNLLEFNVSVNNLTGSLPSEIDKLLMVQLFDVATNQLSGAIPDTIGNFLNLEYLIMSGNSFEGPIPSSLANLEVVTLVDISSNRLSATIPSLDGLQYLQYLNLSSNQLQGEVPKSGIFLNISAVFLSDNPELCGGIVELGLPKCSVGSTGKRKIGKLIAGVVVGGIGACLAIATAFLFWTRRKPVAKMDTDLSLLEGVHRAYSYYELKHATGDFAHENLIGKGSFGSVYKGVTRDGNSIAIKVIDLDHRGGMKGFVNECEVLRNIRHRNLVKILSACSSLDFKALVLEFMPNGNLETWLHGRGDGRSERWLPLKQRINIALDVAAAMEYLHDGFETPVVHCDLKPSNVLLDVDMTAHVADFGLARFLQDQGDSTSHSQSISSGLKGSIGYIPPEYGYGVGISTKGDVYSYGILLLEMLTQRSPTDQTFHEEANLSRWVEAAIPNSVIDILDERLKELCFHMNTMDHLINILNLGLKCTNEYPNERPEMKEVYTTIKRRSIQQNLPAMALLIPQPSPNFFRIRTIPFYIAILTFPMAQLSLLCFFFFLYFAAPAASQQLYFAGFHDAAAAANLSLTDIAKIEPNGILKLTNDTSRLQGHAFYTSPVRFKNSSDGKAFSFSTAFAIAIVPEYPTLGGHGLAFTIAPSKTLRGLPSQYLGLLNATDVGNFSNHLLAVEFDTVQDFEFGDINDNHVGINLNNMVSNDSTTASYFVDDGPIKQNLTLKSGRPVQAWIDYDSSVNSLTVALSPFSTKPKKPILSFNVDLSPILHEFMYVGFSASTGLLASSHYVLGWSFSMNGAAQSLDLSSLPSVPGPKKNHTGFTIGVSITAFLIVIIAICVAVFIIWKIKTADIIESWELEIGPHRYSYKELKQATKRFRDKELLGRGGFGKVYKGTLPNTKTQVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYEFMANGSLDNYIFDEPDVILSWNQRFRIIKGVASGLLYLHEGYEQVVLHRDVKASNVLLDSEMNGKLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKSTTSSDVYAFGALLLEVACGRRPIDPKSSSEELVLVDWVWENYREGRLLEVMDPKLKGDFNEVEAVIILKLGLFCSNDTAAARPSMRQVVRFLEGEIGVPDEISAPRVVEGGKNSEGYGYEFCFYFHVSFASKWQRLSCKQQKQVQVSKKQIKQLQGSQNQVKKLRFSLFDL 1713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1371766 1379752 + CmaCh06G002830.1 Cma06g00283 295837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00283 1713 SMART serkin_6 1364 1634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00283 1713 SMART serkin_6 702 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00283 1713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
Cma06g00283 1713 SUPERFAMILY L domain-like 55 369 - -
Cma06g00283 1713 Pfam Legume lectin domain 1045 1295 IPR001220 GO:0030246
Cma06g00283 1713 ProSitePatterns Legume lectins beta-chain signature. 1160 1166 IPR019825 -
Cma06g00283 1713 ProSiteProfiles Protein kinase domain profile. 702 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00283 1713 Gene3D Ribonuclease Inhibitor 335 634 IPR032675 -
Cma06g00283 1713 Gene3D Ribonuclease Inhibitor 155 263 IPR032675 -
Cma06g00283 1713 CDD STKc_IRAK 708 985 - -
Cma06g00283 1713 Gene3D Ribonuclease Inhibitor 264 334 IPR032675 -
Cma06g00283 1713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1485 1497 IPR008271 GO:0004672|GO:0006468
Cma06g00283 1713 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524
Cma06g00283 1713 Gene3D Ribonuclease Inhibitor 32 151 IPR032675 -
Cma06g00283 1713 SUPERFAMILY Protein kinase-like (PK-like) 1346 1647 IPR011009 -
Cma06g00283 1713 PANTHER - 640 988 - -
Cma06g00283 1713 PANTHER - 1029 1660 - -
Cma06g00283 1713 ProSiteProfiles Protein kinase domain profile. 1364 1638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00283 1713 SUPERFAMILY Protein kinase-like (PK-like) 684 982 IPR011009 -
Cma06g00283 1713 Gene3D Transferase(Phosphotransferase) domain 1 778 995 - -
Cma06g00283 1713 CDD lectin_legume_LecRK_Arcelin_ConA 1048 1285 IPR001220 GO:0030246
Cma06g00283 1713 SMART LRR_typ_2 121 145 IPR003591 -
Cma06g00283 1713 SMART LRR_typ_2 169 192 IPR003591 -
Cma06g00283 1713 SMART LRR_typ_2 583 608 IPR003591 -
Cma06g00283 1713 SMART LRR_typ_2 416 439 IPR003591 -
Cma06g00283 1713 Pfam Leucine rich repeat 171 230 IPR001611 GO:0005515
Cma06g00283 1713 SUPERFAMILY L domain-like 373 622 - -
Cma06g00283 1713 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 640 988 - -
Cma06g00283 1713 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 1029 1660 - -
Cma06g00283 1713 Gene3D Phosphorylase Kinase; domain 1 1349 1440 - -
Cma06g00283 1713 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Cma06g00283 1713 Pfam Protein kinase domain 704 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00283 1713 Pfam Protein kinase domain 1365 1572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00283 1713 SUPERFAMILY Concanavalin A-like lectins/glucanases 1045 1301 IPR013320 -
Cma06g00283 1713 Gene3D Transferase(Phosphotransferase) domain 1 1441 1647 - -
Cma06g00283 1713 Gene3D Phosphorylase Kinase; domain 1 683 777 - -
Cma06g00283 1713 CDD STKc_IRAK 1370 1636 - -
Cma06g00283 1713 Gene3D - 1043 1284 - -
Cma06g00283 1713 ProSitePatterns Protein kinases ATP-binding region signature. 1370 1393 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00283 Cma-Chr6:1371766 Cma15g00131 Cma-Chr15:607567 5.83E-37 dispersed
Cma14g00127 Cma-Chr14:535702 Cma06g00283 Cma-Chr6:1371766 7.46E-41 dispersed
Cma14g00201 Cma-Chr14:864110 Cma06g00283 Cma-Chr6:1371766 6.78E-37 dispersed
Cma18g00370 Cma-Chr18:2011296 Cma06g00283 Cma-Chr6:1371766 1.64E-42 dispersed
Cma14g00124 Cma-Chr14:532341 Cma06g00283 Cma-Chr6:1371766 3.20E-49 wgd
Cma03g00415 Cma-Chr3:4475133 Cma06g00283 Cma-Chr6:1371766 2.68E-40 wgd
Cma06g00283 Cma-Chr6:1371766 Cma07g01005 Cma-Chr7:5205608 5.36E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68625 PF00069 Pkinase 6.30E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00283 - - cmax:111470057 1917.51