Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00294 ATGGATCCACGCCTTAGACGACATGGTGGTTCCATGAACGGAATTCTTTTAGATAATGGTTCTTTTTTGGTTCAATCACAAGAGGATGGTATAGGGTCTATATTTCAGAATACCATTATGAGTCATAGCTTCCAAGAATTTGATTGCCTTCCTCCTGATCCATCACCGAGTACTATAGCCTCAAGTTCCAGCGTTATCACCTCATCTTCGAATGATGCGAGTCACGAGGAGGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGAGATTTATAAATCAGATTCTCATGGAAGAAGATATGGAGGACAAGACTTGCATGCTACAAGATTCTTTGGATCTTCAAGCCGCTGAGAAACCATTCTACGAGGTTCTCGGGAAAAAGTATCCTCCTTCCCCGGAGCCAAATAGATCTCTGGGCAATCAATACAGTGATAGCTTCAATGAAGAACTTTGTGGAGATAGTAGTAATTACCTGATTGGTTACAATAATACTTCTTATTATGGTGATGATAACGCTTTTGAAACTCAGAGTGGAGATGTGTTTCGAATCAGAAGCACCTTAGGTGATACTATTTCTCCATCATCTAATAGCTCCTCAAATAGGATAGTTAATGGGGCTGATGGGTGGGTGGACTTCTCGAATAATGCAATTCGAATCCCTGAGCCTAACAACAGAAGCCAATCTATTTGGCAGTTCCAAAAAGGGCTTGAAGAGGCTAGCAAATTTTTACCCGGTGGAAACAACCTGTGTCTTGATTTTGAGGGAAACGAGTCAGCAACTCAGGGTTTGGATGAGGGAACGTGCCAGATGTATGTGAAGGCTGCAAGAAATGATCAGAGGAAGACTTTGTCACTTGAGTCACGAATTAGAAAGAATCTGCATGATGAGGATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCTATATCTACCGAGTCAACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTTGTAGTGCAGGGGAGGGGCACGATCGGTTAGTTTCATTTCGACAGGAATTACGGAATGCTAAAATCAAAAGCATGCTGCAGACTGGGCAACTAAAGGAGTCTAATGGTGGGAGAGGTCGTCGGAAGAAGCAAAGTGGGAAAAAGGAGGTTGTGGATTTGAGAACTCTTCTGATTAGCTGTGCTCAAGCTGTTGCAGCTGATGACCATAGGAATGCTAGTGAGCTTCTAAAGCAGGTCAGGCAACATGCTTCTCCCTTTGGAGATGGAAATCAGAGACTGGCCAGTTGTTTTGCCGATGGTCTGGAGGCACGCTTGGCAGGTACTGGTAGCCAAATTTACAAAGGTCTAATTAATAAAAGAACATCTGCTGCTGATGTTTTGAAAGCCTATCACCTGTATCTTGCGGCCTGCCCATTTAGGAAGATCTCTAATTTTACTTCAAACAGGACTACAATGATTGCTTCTGAGAATGCAACTAAGCTTCACGTCATAGATTTTGGTATTCTTTATGGTTTTCAGTGGCCTACTTTAATCCAGAGACTGTCATGGAGAAAAGGTGGACCTCCAAAGCTTCGGATTACTGGAATAGAATTTCCCCAGCCTGGCTTCCGTCCAGCAGAGAGAGTTGAGGAGACAGGCCGTCGGTTGGAAGCCTATGCAGAGACTTTTAATGTGCCATTTGAGTATAATGCCATAGCAAAAAAATGGGAAACTATTACAGTTGAAGATCTCAATATCGATCAGGGTGAGTTCATAGTTGTTAATTGTTTGTATCGAGCTAAAAATTTGCTTGAGGAGAGTGTTGCTACAGAGAGTCCTAGAAATACTGTTCTTAGATTGATACACAAAATTAATCCTAACTTATTCATCACTGGCGTTGTCAATGGGGCATACAATGCTCCTTTCTTCGTTACCAGATTTCGAGAGGCCTTGTTTCACTTTTCTGCTATCTTTGATACGCTTGAAACTGTTGTACCTCGTGAGGATTGGGAGAGAATGCTATTGGAGAGAGAGATCTTTGGTAGGGAGGCTTTAAACGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCAGAAACATACAAGCAATGGCAATTCCGGATCATGAGGGCTGGATTTGAGCAACTTCCTTTTCATCCTGAGATTTTTGAGAGGGCTGTTGAAAAGGTGCGGTCAAGTTACCACAGAGATTTTTTGATTGATGAAGATAGTAAATGGATACTTCAGGGATGGAAAGGTCGAATTATATATGCCATCTCTGCATGGAAACCTACTCAAGAGTGA 2274 42.35 MDPRLRRHGGSMNGILLDNGSFLVQSQEDGIGSIFQNTIMSHSFQEFDCLPPDPSPSTIASSSSVITSSSNDASHEEDYLEDCDFSDAVLRFINQILMEEDMEDKTCMLQDSLDLQAAEKPFYEVLGKKYPPSPEPNRSLGNQYSDSFNEELCGDSSNYLIGYNNTSYYGDDNAFETQSGDVFRIRSTLGDTISPSSNSSSNRIVNGADGWVDFSNNAIRIPEPNNRSQSIWQFQKGLEEASKFLPGGNNLCLDFEGNESATQGLDEGTCQMYVKAARNDQRKTLSLESRIRKNLHDEDGDLEEERSSKQAAISTESTLRSKMFDIVLLCSAGEGHDRLVSFRQELRNAKIKSMLQTGQLKESNGGRGRRKKQSGKKEVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGNQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTTMIASENATKLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGFRPAERVEETGRRLEAYAETFNVPFEYNAIAKKWETITVEDLNIDQGEFIVVNCLYRAKNLLEESVATESPRNTVLRLIHKINPNLFITGVVNGAYNAPFFVTRFREALFHFSAIFDTLETVVPREDWERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFEQLPFHPEIFERAVEKVRSSYHRDFLIDEDSKWILQGWKGRIIYAISAWKPTQE 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1409245 1411518 - CmaCh06G002940.1 Cma06g00294 295848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00294 757 MobiDBLite consensus disorder prediction 52 73 - -
Cma06g00294 757 MobiDBLite consensus disorder prediction 55 73 - -
Cma06g00294 757 PANTHER SCARECROW-LIKE PROTEIN 9 39 754 - -
Cma06g00294 757 ProSiteProfiles GRAS family profile. 373 753 IPR005202 -
Cma06g00294 757 Pfam GRAS domain family 382 753 IPR005202 -
Cma06g00294 757 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 39 754 IPR005202 -
Cma06g00294 757 MobiDBLite consensus disorder prediction 353 376 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00294 Cma14g00142 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00294 Cma-Chr6:1409245 Cma20g00670 Cma-Chr20:3070596 6.15E-72 dispersed
Cma01g00616 Cma-Chr1:3211473 Cma06g00294 Cma-Chr6:1409245 0 wgd
Cma13g00118 Cma-Chr13:798320 Cma06g00294 Cma-Chr6:1409245 0 wgd
Cma14g00142 Cma-Chr14:584353 Cma06g00294 Cma-Chr6:1409245 0 wgd
Cma02g00793 Cma-Chr2:4707257 Cma06g00294 Cma-Chr6:1409245 0 wgd
Cma20g00394 Cma-Chr20:1888552 Cma06g00294 Cma-Chr6:1409245 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35154 PF03514 GRAS 8.10E-116 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00294 - - csv:101205887 1258.82