Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00304 ATGAATTTTTCATCCATTCCTGCTTATCTTCATCCTTCTAATTGGCAACAGCAAGTTTCCCATCAACTGGGAACTACTACTACTACTACTACTACCTCTGCACCCACTTCTCAGCTTCCTCCGCCTCCTCCTCCTCCACCGCCACCACCACCTCATGGCGGTTCCATCCGGCCCGGTTCCATGGCGGAGCGAGCTCGATTGGCTAATATTCCCATGCCTTATGCTACATTGAAGTGCCCAAGATGTGAATCAACCAACACAAAGTTTTGTTACTTCAACAATTATAGCCTAACTCAACCTCGCCACTTTTGCAAGACTTGCCGACGGTACTGGACGAGAGGTGGCGCTCTGAGGAACGTCCCGGTCGGGGGCGGTTGTCGGAGGAACAAAAGAAGTAAAGGGAGAAATTCTAAATCGCCCCCGGTTAGTTCAGACCGGCAACAACAAACTAGCGGTTCAGCTAATTCCTCATCAAGTGCAATAGCTTCCAATAATAGTGGACTTTCCCCACAGATCCCACCACACCGCTTCGCTCCTCTCCTCCACCACCACCACCAACAACTCACTGACTTCGACATCGGAGGCTTCAACTACGGCGGCGGCGGCGTACTCTCAGCTCCTGCCACCGCCGCCGCAGCCGGCGACGACCTGAGTTTCCAATTGGGTAACACTAATTTAGCTGGAGGAACAAGTATAGGATCTCTCTTGGGATTTGACCAACAATGGCGGCTCCAGCAACAAGCTCCCCAATTTCCCTTCTTGTCGAGCCTCGACCCTTTCGACGGCGGTAGTAGCGGCGGCGGCGATGGGTCGGGGTGGCAAATGAGACCAAAATTACCATCAGTATCAAGGAATTTAACCCAAATGGGAAATTCAGTGAAAATGGAAGGAACCCCAAATCATGAAGCTAACATTGGAAGGCAATTTGTTGGGAATGAACAATATTGGAGCGGTGGATCAATGGCATGGTCGGATCTTTCTGGCTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1020 50.49 MNFSSIPAYLHPSNWQQQVSHQLGTTTTTTTTSAPTSQLPPPPPPPPPPPPHGGSIRPGSMAERARLANIPMPYATLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGRNSKSPPVSSDRQQQTSGSANSSSSAIASNNSGLSPQIPPHRFAPLLHHHHQQLTDFDIGGFNYGGGGVLSAPATAAAAGDDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQAPQFPFLSSLDPFDGGSSGGGDGSGWQMRPKLPSVSRNLTQMGNSVKMEGTPNHEANIGRQFVGNEQYWSGGSMAWSDLSGFSSSSSTRNPL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1443954 1445233 + CmaCh06G003040.1 Cma06g00304 295858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00304 339 MobiDBLite consensus disorder prediction 14 35 - -
Cma06g00304 339 MobiDBLite consensus disorder prediction 118 176 - -
Cma06g00304 339 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Cma06g00304 339 SUPERFAMILY Formin homology 2 domain (FH2 domain) 40 50 - -
Cma06g00304 339 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 6 335 - -
Cma06g00304 339 MobiDBLite consensus disorder prediction 14 59 - -
Cma06g00304 339 MobiDBLite consensus disorder prediction 136 171 - -
Cma06g00304 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 335 IPR045174 GO:0003700|GO:0006355
Cma06g00304 339 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Cma06g00304 339 MobiDBLite consensus disorder prediction 36 55 - -
Cma06g00304 339 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00304 - - - cpep:111791192 422.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00431 Cma06g00304 CCT
Cma03g00431 Cma06g00304 ECH
Cma06g00304 Cma14g00157 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00304 Cma-Chr6:1443954 Cma15g00398 Cma-Chr15:1778177 3.05E-45 dispersed
Cma01g00595 Cma-Chr1:3123663 Cma06g00304 Cma-Chr6:1443954 5.99E-53 wgd
Cma13g00133 Cma-Chr13:909757 Cma06g00304 Cma-Chr6:1443954 2.04E-48 wgd
Cma14g00157 Cma-Chr14:642222 Cma06g00304 Cma-Chr6:1443954 1.77E-135 wgd
Cma02g00812 Cma-Chr2:4795103 Cma06g00304 Cma-Chr6:1443954 4.76E-45 wgd
Cma20g00412 Cma-Chr20:1971141 Cma06g00304 Cma-Chr6:1443954 3.60E-44 wgd
Cma03g00431 Cma-Chr3:4562700 Cma06g00304 Cma-Chr6:1443954 1.21E-42 wgd
Cma04g01188 Cma-Chr4:6067895 Cma06g00304 Cma-Chr6:1443954 1.01E-48 wgd
Cma04g00219 Cma-Chr4:1060358 Cma06g00304 Cma-Chr6:1443954 2.60E-45 wgd
Cma06g00304 Cma-Chr6:1443954 Cma07g00977 Cma-Chr7:4730534 7.03E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g716 Blo01g01119 . . . Bpe04g01330 Bpe03g01040 . . Cmo06g00304 Cmo14g00147 Cma03g00431 . Car03g00379 . . Cpe10g00881 Cpe08g01160 . . . . . . . Cla04g00818 Cam04g0898 Cec04g0967 Cco04g1020 Clacu04g0873 Cmu04g0866 Cre01g0476 Cone3ag0333 Cone10ag0305 Cone13ag1337 Cone19ag1320 Lsi01g01417 Csa04g01478 . Cme04g02612 Blo07g01180 . . Bda05g00969 . Bpe02g00845 Bma01g01875 . Sed02g0688 Cmo03g00443 . Cma06g00304 Cma14g00157 Car06g00263 Car14g00128 Cpe03g00124 . Bhi11g02243 Tan08g1993 Cmetu08g1957 . . . . Cla10g02000 Cam10g2068 Cec10g2109 Cco10g2091 Clacu10g2073 Cmu10g2821 Cre10g2214 Lsi03g02101 Csa03g03190 Chy04g02140 Cme08g02396
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT1G29160 56.9 1.6e-40 163.3
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 51.7 3.5e-40 162.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT1G29160 53.0 4.6e-40 161.8
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 53.8 6.0e-40 161.4
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.0e-41 165.2
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT2G34140 56.4 4.0e-41 165.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT2G34140 51.8 1.2e-37 153.7
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 50.9 4.6e-37 151.8
Cma04g02639 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 8.6e-40 161.8
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 61.7 8.1e-38 155.2
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 64.8 1.4e-37 154.5
Cma14g00157 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 62.4 1.2e-36 151.4
Cma04g01188 CST 1 134 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.5e-36 151.0
Cma13g00133 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cma11g00141 CCT,CST,ECH 132 478 C2C2-Dof Transcription Factor Family AT3G47500 51.6 5.0e-83 305.8
Cma14g00157 CCT,CST,ECH 59 132 C2C2-Dof Transcription Factor Family AT5G02460 93.2 8.8e-39 158.7
Cma01g00595 CCT,CST,ECH 1 130 C2C2-Dof Transcription Factor Family AT5G02460 55.0 2.0e-38 157.5
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 60.4 2.0e-38 157.5
Cma13g00133 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT5G02460 61.9 2.4e-36 150.6
Cma14g00157 CCT,CST,ECH 53 139 C2C2-Dof Transcription Factor Family AT3G55370 79.3 2.6e-37 153.7
Cma13g00133 CCT,CST,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 50.6 5.8e-37 152.5
Cma03g00431 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.8e-37 152.5
Cma11g00228 CCT,CST 30 311 C2C2-Dof Transcription Factor Family AT5G60850 51.9 4.0e-47 186.0
Cma10g00281 CCT,CST 26 318 C2C2-Dof Transcription Factor Family AT5G60850 52.8 8.8e-47 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004817 1 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35156 PF02701 zf-Dof 1.20E-31 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00304 Cma_Chr06 FPKM 4.798094 6.118149 7.230374 7.014803 2.797771 2.743705 2.843413 0.37631 0.314643 0.327648