Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00304 ATGAATTTTTCATCCATTCCTGCTTATCTTCATCCTTCTAATTGGCAACAGCAAGTTTCCCATCAACTGGGAACTACTACTACTACTACTACTACCTCTGCACCCACTTCTCAGCTTCCTCCGCCTCCTCCTCCTCCACCGCCACCACCACCTCATGGCGGTTCCATCCGGCCCGGTTCCATGGCGGAGCGAGCTCGATTGGCTAATATTCCCATGCCTTATGCTACATTGAAGTGCCCAAGATGTGAATCAACCAACACAAAGTTTTGTTACTTCAACAATTATAGCCTAACTCAACCTCGCCACTTTTGCAAGACTTGCCGACGGTACTGGACGAGAGGTGGCGCTCTGAGGAACGTCCCGGTCGGGGGCGGTTGTCGGAGGAACAAAAGAAGTAAAGGGAGAAATTCTAAATCGCCCCCGGTTAGTTCAGACCGGCAACAACAAACTAGCGGTTCAGCTAATTCCTCATCAAGTGCAATAGCTTCCAATAATAGTGGACTTTCCCCACAGATCCCACCACACCGCTTCGCTCCTCTCCTCCACCACCACCACCAACAACTCACTGACTTCGACATCGGAGGCTTCAACTACGGCGGCGGCGGCGTACTCTCAGCTCCTGCCACCGCCGCCGCAGCCGGCGACGACCTGAGTTTCCAATTGGGTAACACTAATTTAGCTGGAGGAACAAGTATAGGATCTCTCTTGGGATTTGACCAACAATGGCGGCTCCAGCAACAAGCTCCCCAATTTCCCTTCTTGTCGAGCCTCGACCCTTTCGACGGCGGTAGTAGCGGCGGCGGCGATGGGTCGGGGTGGCAAATGAGACCAAAATTACCATCAGTATCAAGGAATTTAACCCAAATGGGAAATTCAGTGAAAATGGAAGGAACCCCAAATCATGAAGCTAACATTGGAAGGCAATTTGTTGGGAATGAACAATATTGGAGCGGTGGATCAATGGCATGGTCGGATCTTTCTGGCTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1020 50.49 MNFSSIPAYLHPSNWQQQVSHQLGTTTTTTTTSAPTSQLPPPPPPPPPPPPHGGSIRPGSMAERARLANIPMPYATLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGRNSKSPPVSSDRQQQTSGSANSSSSAIASNNSGLSPQIPPHRFAPLLHHHHQQLTDFDIGGFNYGGGGVLSAPATAAAAGDDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQAPQFPFLSSLDPFDGGSSGGGDGSGWQMRPKLPSVSRNLTQMGNSVKMEGTPNHEANIGRQFVGNEQYWSGGSMAWSDLSGFSSSSSTRNPL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1443954 1445233 + CmaCh06G003040.1 Cma06g00304 295858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00304 339 MobiDBLite consensus disorder prediction 14 35 - -
Cma06g00304 339 MobiDBLite consensus disorder prediction 118 176 - -
Cma06g00304 339 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Cma06g00304 339 SUPERFAMILY Formin homology 2 domain (FH2 domain) 40 50 - -
Cma06g00304 339 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 6 335 - -
Cma06g00304 339 MobiDBLite consensus disorder prediction 14 59 - -
Cma06g00304 339 MobiDBLite consensus disorder prediction 136 171 - -
Cma06g00304 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 335 IPR045174 GO:0003700|GO:0006355
Cma06g00304 339 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Cma06g00304 339 MobiDBLite consensus disorder prediction 36 55 - -
Cma06g00304 339 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00431 Cma06g00304 CCT
Cma03g00431 Cma06g00304 ECH
Cma06g00304 Cma14g00157 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00304 Cma-Chr6:1443954 Cma15g00398 Cma-Chr15:1778177 3.05E-45 dispersed
Cma01g00595 Cma-Chr1:3123663 Cma06g00304 Cma-Chr6:1443954 5.99E-53 wgd
Cma13g00133 Cma-Chr13:909757 Cma06g00304 Cma-Chr6:1443954 2.04E-48 wgd
Cma14g00157 Cma-Chr14:642222 Cma06g00304 Cma-Chr6:1443954 1.77E-135 wgd
Cma02g00812 Cma-Chr2:4795103 Cma06g00304 Cma-Chr6:1443954 4.76E-45 wgd
Cma20g00412 Cma-Chr20:1971141 Cma06g00304 Cma-Chr6:1443954 3.60E-44 wgd
Cma03g00431 Cma-Chr3:4562700 Cma06g00304 Cma-Chr6:1443954 1.21E-42 wgd
Cma04g01188 Cma-Chr4:6067895 Cma06g00304 Cma-Chr6:1443954 1.01E-48 wgd
Cma04g00219 Cma-Chr4:1060358 Cma06g00304 Cma-Chr6:1443954 2.60E-45 wgd
Cma06g00304 Cma-Chr6:1443954 Cma07g00977 Cma-Chr7:4730534 7.03E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35156 PF02701 zf-Dof 1.20E-31 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00304 - - cpep:111791192 422.55