Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00316 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTGCAAATAAGCCGCTGGAGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGTGACCATCAGTATCTAGATGAAGATACGGAACCTGAGTCGTTTCACAATAAGAAGCAGGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCTAATCCTGTAATTTCCCCGAAAGGGAATCATTTCCAAGATATTACAAGTCAGCCAGACGAGCAAGAAAATACCAACCAAGTTGAACGTGGGGACCTTACGTCGGCTTGTTCGGGAAATTCAAGCTCAGAGGATACTTCAAGCGATGGAATTCGTTGCCAGAACAACACGTCTCGGAATGATGTTGATGTGTGTGATGATGATGAAGTCTCCCGGGTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACCGGAATTAAGAAAATTACGTTCAAATTCAGCAAAAAAAAGGACAACAATGACGCATCCAGGTCAGCTGACAAAATTCATTCTTATGGAAACTCTGACAAGGACTGTAAACCAGAACCATCCTCGGTTGACGATGCTTATACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTTTCCCCCAGGCCCCAGTAAAATGGAACTGAAAATGTCGAAGAAGGTTTTGCCAAACAATTACCCGTCAAATGTGAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGCGTCAAGTATATATCTACGACAAGTGAGATAAAGCTAGATGGTATCATAAACGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATTCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAAACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTTATACAGGAAATTAAGAGTGCACCTCTTAGCATTTTAGATGAAGTGATTAAGGAAGTAGCCGGTTCATCTGTTAACATGGATTCATTTGAGGCTTGGCAAGTAGTAAGACCCTCGTTTTTATGCAGACCAAACCCTAATTTATCCAACCCAGTCATGCAACAGAAGAAATCGGCAGAGAAAGGCACAAAAAGAAGGGACAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCTGATGGGGCTGAGCTAGCTTACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGCGAGATTAGCCCTTCCCAGTTCGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGTCACATTTATACTACAAATGGTCTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAACTTTCATCAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGTGATTTGATTTTCTGTGATCGATGCCCTCGCGCTTTCCATACAGGGTGCCTGCATCTACAGAATGTCCCAGAAGGTGTTTGGTGTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCAGCTTCCGGAGGCCCTTCGAGTTTTCCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAGATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGCGCTGCTAAATTTGATGATCGAACTGTACTGTTATGTGATCAATGTGAAAGAGAATTCCATGTGGGCTGTCTGCGGGATAGTGGATTATGTGATCTGCAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGATGAGTGCAGTAATATCCATGTGGTCCTTCAGAATACAGTTTTGAACGGGGCACAAATTATTCCAGATCCATTATCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTTGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCAACCCAGAAGATCTTCCATTTCTTTCAAGGGCGACTTCTATTTTTCGGGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATTTGATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTCGGAGGAATGTTTTGTGTTGTTTTAATTGTGAGGTCTATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGCCGCGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATCTGGACCAATAAATTGGGTTTCAGAAAGATGAGTGAAGAACAATTGGCGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAATGGGACATCGATGCTAGAGAAGGTGGTGGTGCGGCGGTCAACATGA 2472 43.41 MGEEAAGLAAVANKPLEKESASSTELKRDHQYLDEDTEPESFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPDEQENTNQVERGDLTSACSGNSSSEDTSSDGIRCQNNTSRNDVDVCDDDEVSRVVIEIPKHASSTGIKKITFKFSKKKDNNDASRSADKIHSYGNSDKDCKPEPSSVDDAYTETSAHSWEGCAESSRFPPGPSKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLDGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWQVVRPSFLCRPNPNLSNPVMQQKKSAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLSSGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGGPSSFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLQELPKDKWFCCDECSNIHVVLQNTVLNGAQIIPDPLSDLIIRKHVGKGLFVDEALNDVRWQILSGKSRNPEDLPFLSRATSIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMFCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTNKLGFRKMSEEQLAKYMREVQLTIFNGTSMLEKVVVRRST 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1490210 1498453 + CmaCh06G003160.1 Cma06g00316 295870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00316 823 Gene3D - 652 818 - -
Cma06g00316 823 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 351 818 - -
Cma06g00316 823 SUPERFAMILY FYVE/PHD zinc finger 460 515 IPR011011 -
Cma06g00316 823 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 550 610 IPR013083 -
Cma06g00316 823 Pfam Tify domain binding domain 406 455 IPR032308 -
Cma06g00316 823 Pfam Tify domain binding domain 258 312 IPR032308 -
Cma06g00316 823 ProSitePatterns Zinc finger PHD-type signature. 473 512 IPR019786 -
Cma06g00316 823 ProSiteProfiles Zinc finger PHD-type profile. 470 515 IPR019787 -
Cma06g00316 823 MobiDBLite consensus disorder prediction 156 185 - -
Cma06g00316 823 MobiDBLite consensus disorder prediction 20 56 - -
Cma06g00316 823 Pfam PHD-finger 472 514 IPR019787 -
Cma06g00316 823 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 531 IPR013083 -
Cma06g00316 823 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 707 794 IPR016181 -
Cma06g00316 823 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 342 - -
Cma06g00316 823 MobiDBLite consensus disorder prediction 156 188 - -
Cma06g00316 823 SMART PHD_3 472 513 IPR001965 -
Cma06g00316 823 SMART PHD_3 551 608 IPR001965 -
Cma06g00316 823 MobiDBLite consensus disorder prediction 1 123 - -
Cma06g00316 823 MobiDBLite consensus disorder prediction 57 120 - -
Cma06g00316 823 ProSiteProfiles Zinc finger PHD-type profile. 549 610 IPR019787 -
Cma06g00316 823 PANTHER AUTOIMMUNE REGULATOR 33 342 - -
Cma06g00316 823 PANTHER AUTOIMMUNE REGULATOR 351 818 - -
Cma06g00316 823 SUPERFAMILY FYVE/PHD zinc finger 550 608 IPR011011 -
Cma06g00316 823 ProSitePatterns Zinc finger PHD-type signature. 552 607 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01372 Cma-Chr2:8001240 Cma06g00316 Cma-Chr6:1490210 6.44E-07 dispersed
Cma04g00226 Cma-Chr4:1093147 Cma06g00316 Cma-Chr6:1490210 6.32E-41 dispersed
Cma04g01200 Cma-Chr4:6114568 Cma06g00316 Cma-Chr6:1490210 3.92E-40 dispersed
Cma06g00316 Cma-Chr6:1490210 Cma14g00167 Cma-Chr14:673119 0 dispersed
Cma06g00312 Cma-Chr6:1478464 Cma06g00316 Cma-Chr6:1490210 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35157 PF16135 TDBD 2.80E-12 No_clan Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00316 - - cmax:111481523 1481.08