Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00316 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTGCAAATAAGCCGCTGGAGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGTGACCATCAGTATCTAGATGAAGATACGGAACCTGAGTCGTTTCACAATAAGAAGCAGGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCTAATCCTGTAATTTCCCCGAAAGGGAATCATTTCCAAGATATTACAAGTCAGCCAGACGAGCAAGAAAATACCAACCAAGTTGAACGTGGGGACCTTACGTCGGCTTGTTCGGGAAATTCAAGCTCAGAGGATACTTCAAGCGATGGAATTCGTTGCCAGAACAACACGTCTCGGAATGATGTTGATGTGTGTGATGATGATGAAGTCTCCCGGGTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACCGGAATTAAGAAAATTACGTTCAAATTCAGCAAAAAAAAGGACAACAATGACGCATCCAGGTCAGCTGACAAAATTCATTCTTATGGAAACTCTGACAAGGACTGTAAACCAGAACCATCCTCGGTTGACGATGCTTATACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTTTCCCCCAGGCCCCAGTAAAATGGAACTGAAAATGTCGAAGAAGGTTTTGCCAAACAATTACCCGTCAAATGTGAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGCGTCAAGTATATATCTACGACAAGTGAGATAAAGCTAGATGGTATCATAAACGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATTCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAAACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTTATACAGGAAATTAAGAGTGCACCTCTTAGCATTTTAGATGAAGTGATTAAGGAAGTAGCCGGTTCATCTGTTAACATGGATTCATTTGAGGCTTGGCAAGTAGTAAGACCCTCGTTTTTATGCAGACCAAACCCTAATTTATCCAACCCAGTCATGCAACAGAAGAAATCGGCAGAGAAAGGCACAAAAAGAAGGGACAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCTGATGGGGCTGAGCTAGCTTACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGCGAGATTAGCCCTTCCCAGTTCGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGTCACATTTATACTACAAATGGTCTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAACTTTCATCAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGTGATTTGATTTTCTGTGATCGATGCCCTCGCGCTTTCCATACAGGGTGCCTGCATCTACAGAATGTCCCAGAAGGTGTTTGGTGTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCAGCTTCCGGAGGCCCTTCGAGTTTTCCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAGATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGCGCTGCTAAATTTGATGATCGAACTGTACTGTTATGTGATCAATGTGAAAGAGAATTCCATGTGGGCTGTCTGCGGGATAGTGGATTATGTGATCTGCAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGATGAGTGCAGTAATATCCATGTGGTCCTTCAGAATACAGTTTTGAACGGGGCACAAATTATTCCAGATCCATTATCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTTGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCAACCCAGAAGATCTTCCATTTCTTTCAAGGGCGACTTCTATTTTTCGGGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATTTGATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTCGGAGGAATGTTTTGTGTTGTTTTAATTGTGAGGTCTATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGCCGCGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATCTGGACCAATAAATTGGGTTTCAGAAAGATGAGTGAAGAACAATTGGCGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAATGGGACATCGATGCTAGAGAAGGTGGTGGTGCGGCGGTCAACATGA 2472 43.41 MGEEAAGLAAVANKPLEKESASSTELKRDHQYLDEDTEPESFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPDEQENTNQVERGDLTSACSGNSSSEDTSSDGIRCQNNTSRNDVDVCDDDEVSRVVIEIPKHASSTGIKKITFKFSKKKDNNDASRSADKIHSYGNSDKDCKPEPSSVDDAYTETSAHSWEGCAESSRFPPGPSKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLDGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWQVVRPSFLCRPNPNLSNPVMQQKKSAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLSSGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGGPSSFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLQELPKDKWFCCDECSNIHVVLQNTVLNGAQIIPDPLSDLIIRKHVGKGLFVDEALNDVRWQILSGKSRNPEDLPFLSRATSIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMFCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTNKLGFRKMSEEQLAKYMREVQLTIFNGTSMLEKVVVRRST 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1490210 1498453 + CmaCh06G003160.1 Cma06g00316 295870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00316 823 Gene3D - 652 818 - -
Cma06g00316 823 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 351 818 - -
Cma06g00316 823 SUPERFAMILY FYVE/PHD zinc finger 460 515 IPR011011 -
Cma06g00316 823 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 550 610 IPR013083 -
Cma06g00316 823 Pfam Tify domain binding domain 406 455 IPR032308 -
Cma06g00316 823 Pfam Tify domain binding domain 258 312 IPR032308 -
Cma06g00316 823 ProSitePatterns Zinc finger PHD-type signature. 473 512 IPR019786 -
Cma06g00316 823 ProSiteProfiles Zinc finger PHD-type profile. 470 515 IPR019787 -
Cma06g00316 823 MobiDBLite consensus disorder prediction 156 185 - -
Cma06g00316 823 MobiDBLite consensus disorder prediction 20 56 - -
Cma06g00316 823 Pfam PHD-finger 472 514 IPR019787 -
Cma06g00316 823 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 531 IPR013083 -
Cma06g00316 823 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 707 794 IPR016181 -
Cma06g00316 823 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 342 - -
Cma06g00316 823 MobiDBLite consensus disorder prediction 156 188 - -
Cma06g00316 823 SMART PHD_3 472 513 IPR001965 -
Cma06g00316 823 SMART PHD_3 551 608 IPR001965 -
Cma06g00316 823 MobiDBLite consensus disorder prediction 1 123 - -
Cma06g00316 823 MobiDBLite consensus disorder prediction 57 120 - -
Cma06g00316 823 ProSiteProfiles Zinc finger PHD-type profile. 549 610 IPR019787 -
Cma06g00316 823 PANTHER AUTOIMMUNE REGULATOR 33 342 - -
Cma06g00316 823 PANTHER AUTOIMMUNE REGULATOR 351 818 - -
Cma06g00316 823 SUPERFAMILY FYVE/PHD zinc finger 550 608 IPR011011 -
Cma06g00316 823 ProSitePatterns Zinc finger PHD-type signature. 552 607 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00316 - - - cmax:111481523 1481.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01372 Cma-Chr2:8001240 Cma06g00316 Cma-Chr6:1490210 6.44E-07 dispersed
Cma04g00226 Cma-Chr4:1093147 Cma06g00316 Cma-Chr6:1490210 6.32E-41 dispersed
Cma04g01200 Cma-Chr4:6114568 Cma06g00316 Cma-Chr6:1490210 3.92E-40 dispersed
Cma06g00316 Cma-Chr6:1490210 Cma14g00167 Cma-Chr14:673119 0 dispersed
Cma06g00312 Cma-Chr6:1478464 Cma06g00316 Cma-Chr6:1490210 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g00316 . 18 818 PHD Transcription Factor Family AT3G53680 53.2 3.6e-244 842.0
Cma14g00167 . 25 857 PHD Transcription Factor Family AT3G53680 52.1 2.3e-238 822.8
Cma04g00226 CST,ECH 438 564 PHD Transcription Factor Family AT3G53680 55.1 6.0e-37 153.7
Cma20g00425 . 312 450 PHD Transcription Factor Family AT3G53680 51.8 6.0e-37 153.7
Cma04g01200 CST,ECH 439 565 PHD Transcription Factor Family AT3G53680 54.3 3.0e-36 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35157 PF16135 TDBD 2.80E-12 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00316 Cma_Chr06 FPKM 12.535947 13.401273 14.379028 15.142605 13.210912 11.821737 13.388531 13.652385 13.853358 13.857226