Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00336 ATGGAAGAATTAAAACCCTCCACTGTAATCATGGCCGCCCTCTCCACACTCTCTCCGCCGCATCTCTCCGATCTCTCCCACTCCATTTTCTCCGACGTCCACACCAGCCGCCGCCGCCTCACCTTCATCCTCTCTTCTCCAACCCTCTTTTCCTTCACTCTCCGCCACCTCAATTCCCTTTCCCTTTCCCACAAATCTCTCCTCGTCGCCCGCTTCCTTCTATCAGCCCTCCGCCGCCTCTCCCGTCCCTTCCAGACGCCGTCGAAGTCCTTCCCCCACCACCCTTCTACCGCCTTCGTTACCCCTCGCGACCTCGACGCCGCCGTCCTCCTCCTCCTTCTCTGCGATGTACGCCAGCATAATCCGGCCGCCCTCGAAACTCCGATCACCCATTGGCGATCGACCCTCTGTCGAATCTACTCCGATTCCCTCTTGACGATCTCTGGCATCGCCACCGGCGGCTCCGGGGCCATTATTCCGTACATTGAGACTGTGGGCAGGTGCTGGAAATTCGTGGGATTTGTTGTGAGCCGCAACGGCGGGAAGGCCCGGAGAGAGGTGGCGGCGTCGCCTGTCGCAGTGGTGGAGTTGCCGTCGGTGGCGGTGGGCGGCTGTATGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAATGAAGGGAGAGACGCGTGTCAATTGCCTTGTGAGCACTTATTCCATTGGCTCTGTATTCTGCCATGGTTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACAGATGATATCTTCGGCGAGATCCAACGGCTCTGGGACATCCTCGTCAAGGTGGGCTCCCCATCTGATGGAGATTAA 843 58.01 MEELKPSTVIMAALSTLSPPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSLSLSHKSLLVARFLLSALRRLSRPFQTPSKSFPHHPSTAFVTPRDLDAAVLLLLLCDVRQHNPAALETPITHWRSTLCRIYSDSLLTISGIATGGSGAIIPYIETVGRCWKFVGFVVSRNGGKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSPSDGD 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1571748 1572590 + CmaCh06G003360.1 Cma06g00336 295890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00336 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 257 IPR013083 -
Cma06g00336 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 3 275 - -
Cma06g00336 280 Pfam Ring finger domain 209 251 IPR001841 -
Cma06g00336 280 SUPERFAMILY RING/U-box 209 257 - -
Cma06g00336 280 ProSiteProfiles Zinc finger RING-type profile. 210 251 IPR001841 -
Cma06g00336 280 SMART ring_2 210 250 IPR001841 -
Cma06g00336 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00336 Cma-Chr6:1571748 Cma18g00096 Cma-Chr18:442584 7.15E-15 dispersed
Cma06g00336 Cma-Chr6:1571748 Cma15g00211 Cma-Chr15:1024855 4.05E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00336 - - csv:101209757 421.779