Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00339 ATGGTTAAACCCTGCTGGAAATCCCATGATGATAATGATTCAAACGGACGAGTCGATGGATTGTTGTGGTCTAAGGATCTGGGGCACCATGCTTATGGACAATTCTCCATGGCAGTCATCCAAGCTAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCATTGAGTATGTCCAATCCAGGTCCACAGGGGACCTTCGTCGGAGTTTATGACGGTCATGCTGGAACTGAAGCTTCACGGTTCATCAATGACAATCTCTTCAGCAATCTCAAAAGATATGCATCTTTGCACCAGAGCATATCAGAAAACGTTATCAGGAAGGCTTTTGCAGCAACAGAAGAGGGATTTCTCTCTCTCGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCTGGATCATGTTGTTTGGTGGGGATCATATGCAACGGACAGCTATATATTGCCAATGCAGGTGATTCGCGAGTAGTGCTCGGGAGAACTGAGAGAGCCACTAAAGAAATCATTGCCATTCAATTGTCCACAGAGCACAATGCGAGCATAGAATCAGTGAGAGATGAACTTCGGATGGTTCATCCAGAAGATCCTCAGATTGTGATCCTAAAACACAATGTCTGGCGTGTTAAAGGTATCATACAGGTTTCAAGATCCATTGGCGATGCATATTTGAAAAAGGCGAAGTTCAACAGACCTCCTCTGCCGCCTAAATTTCAACTGCCTGAGCCATTTTACGTACCAATCCTCAGTGCAGAACCATCAATACTGGTGCACAAACTCCGCCCAGATGATCAATATCTCATATTTGCTTCTGATGGCCTGTGGGAGCACATTAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTATTCTCGAACTGGAATAGCAAGGAGACTTGTCAAGGCTGCACTTCGAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGTGTGAGAAGGCATTTTCACGATGACATTTCTGTTGTAGTTGTGTTCTTAGATCCTCATTTGATCAATGGTAGGCCCTCTCCTTGTTCCTTGTCAATCAGAGGAGGTCTCCCTTCGTCAGAAAATTCCTAG 1107 44.53 MVKPCWKSHDDNDSNGRVDGLLWSKDLGHHAYGQFSMAVIQANNVVEDQSQLESGALSMSNPGPQGTFVGVYDGHAGTEASRFINDNLFSNLKRYASLHQSISENVIRKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRVVLGRTERATKEIIAIQLSTEHNASIESVRDELRMVHPEDPQIVILKHNVWRVKGIIQVSRSIGDAYLKKAKFNRPPLPPKFQLPEPFYVPILSAEPSILVHKLRPDDQYLIFASDGLWEHISNQKAVDIVNSYSRTGIARRLVKAALREAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLINGRPSPCSLSIRGGLPSSENS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1578877 1580622 + CmaCh06G003390.1 Cma06g00339 295893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00339 368 CDD PP2Cc 32 342 IPR001932 -
Cma06g00339 368 ProSiteProfiles PPM-type phosphatase domain profile. 31 342 IPR001932 -
Cma06g00339 368 SUPERFAMILY PP2C-like 35 344 IPR036457 -
Cma06g00339 368 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169
Cma06g00339 368 PANTHER ALPHABET, ISOFORM E-RELATED 3 361 - -
Cma06g00339 368 SMART PP2C_4 12 340 IPR001932 -
Cma06g00339 368 Gene3D - 21 349 IPR036457 -
Cma06g00339 368 Pfam Protein phosphatase 2C 61 311 IPR001932 -
Cma06g00339 368 PANTHER PROTEIN PHOSPHATASE 2C 67-RELATED 3 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00254 Cma-Chr4:1239018 Cma06g00339 Cma-Chr6:1578877 0 dispersed
Cma06g00339 Cma-Chr6:1578877 Cma03g00656 Cma-Chr3:5525611 9.27E-180 dispersed
Cma14g00181 Cma-Chr14:756985 Cma06g00339 Cma-Chr6:1578877 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00339 K01102 - csv:101210750 687.567