Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00341 ATGGCTACTAGTTTAAATGTGGTGCCGGAAGTTCGTCCGCCGTCATTAGAGGCCGACGCCGAACAGCCTCCACTCTTCGACGGAACTACCAGGTTGTATATAGCTTACTATTGCCCGTTTGCACAGCGTGCTTGGATCACAAGAAATTACAAGGGACTACAAGATCAAATTAAACTAGTGCCTCTAAACCTTCAAAACAGGCCTGCCTGGTATAAGGAAAAAGTATACCCTTCAAACAAGGTGCCAGCTTTGGAACACAATGGGAAAGTTACAGGAGAAAGCCTTGATTTGATCAAATACATAGATAGCAACTTTGAAGGACCTTCTCTTTTCCCAGATGATCCTGTTAAAAAACAATTTGGTGAAGAGTTGCTAGCTTATACTGACACATTTATTGGGGCGGTATACCCTTCATTTAAGGGTGACCCAGCCAAGGAAGCAGGTCCTCAATTTGATTACCTGGAGACTGCTCTGCAAAAATTTGATGATGGGCCATTCTTTTTGGGTCAATTCAGTGGGGTGGACATTGCATACATCACATTTATTGAAAGGTTCCATGTTTTCTTAACTGAGGTTTTCAAGTATGATATCACAGAAGGAAGACCTAACCTAGCAGCATGGATTGAGGAGTTAAACAAGATTGATGCTTACAAGCAAACAAAACATGATCCTAAAGCCATTGTTGAACTTTACAAGACTCGCTTCATGGCTTAA 714 41.88 MATSLNVVPEVRPPSLEADAEQPPLFDGTTRLYIAYYCPFAQRAWITRNYKGLQDQIKLVPLNLQNRPAWYKEKVYPSNKVPALEHNGKVTGESLDLIKYIDSNFEGPSLFPDDPVKKQFGEELLAYTDTFIGAVYPSFKGDPAKEAGPQFDYLETALQKFDDGPFFLGQFSGVDIAYITFIERFHVFLTEVFKYDITEGRPNLAAWIEELNKIDAYKQTKHDPKAIVELYKTRFMA 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1583631 1587608 + CmaCh06G003410.1 Cma06g00341 295895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00341 237 SUPERFAMILY GST C-terminal domain-like 105 235 IPR036282 -
Cma06g00341 237 Pfam Glutathione S-transferase, C-terminal domain 151 209 - -
Cma06g00341 237 SUPERFAMILY Thioredoxin-like 22 110 IPR036249 -
Cma06g00341 237 CDD GST_C_Lambda 114 232 - -
Cma06g00341 237 Pfam Glutathione S-transferase, N-terminal domain 32 108 IPR004045 -
Cma06g00341 237 SFLD Main (cytGST) 31 212 - -
Cma06g00341 237 Gene3D Glutaredoxin 3 106 - -
Cma06g00341 237 SFLD Glutathione Transferase (cytosolic) 31 212 IPR040079 -
Cma06g00341 237 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 28 109 IPR004045 -
Cma06g00341 237 Gene3D - 107 237 - -
Cma06g00341 237 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 4 236 - -
Cma06g00341 237 PANTHER GLUTATHIONE S-TRANSFERASE L1 4 236 IPR044629 GO:0004364
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00341 Cma-Chr6:1583631 Cma04g01230 Cma-Chr4:6275107 2.65E-53 dispersed
Cma06g00341 Cma-Chr6:1583631 Cma06g00342 Cma-Chr6:1588222 6.76E-130 tandem
Cma04g00237 Cma-Chr4:1157423 Cma06g00341 Cma-Chr6:1583631 1.94E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00341 K00799 - csv:101210004 434.491