Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g00342 | ATGGTTGCCTTCGTGGAAGAGGTTTTACCACCGTCGTTGGACGCCACCGCCGAACAACCTCCATTGTTCGATGGAACTACAAGGTTGTATACTGCTTACATTTGTCCGTATGCTCAACGTGTGTGGATCACAAGGAATTACAAGGGATTACAAGATAAAATTAAGCTAGTTCCTCTTAACCTTTTTAATAGGCCTGACTGGTATAAGGAAAAAGTATACCCTACAAGCAAGGTGCCAGCTCTGGAACATAATGGGAAAATTATTGGAGAAAGTATTGATCTGATCAAATATGTTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCTGATGATCCTGCTAAAAAAGAGTATGCTGAAGAGTTGATATCCTACAGTGATACGTTTAATGGTGCAATAATCTCTTCGTTTAAAGGCGATACTGCAAAGGAAGCAGGTGCTCAATTTGATTATTTGGAAAATGCTTTGCAAAAATTCAATGGTCCCTTCTTCCTTGGAGAAATCAGTCAGGTGGATATAGTATACATTCCATTTGTTGAAAGATTCCAAGTTTTCTTATTGGAAGCTTTCAAGATTGACATCACAGAAGGAAGGCCTAAACTAGCTGCATGGATTGAGGAGTTCAACAAGAGTGATGCTTACAAACAAACAAAAGCCGATCCCAAGTTGGTCGTTGAAGTTTATACGAAGCGATTCTTGGTAACATTTGCTTTGCTACACATCTTGCATATAAATGCAATTTTCCTTAAGAATCTATTAACTTTGCTGCTTTGTTAA | 774 | 38.76 | MVAFVEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLFNRPDWYKEKVYPTSKVPALEHNGKIIGESIDLIKYVDSNFEGPSLLPDDPAKKEYAEELISYSDTFNGAIISSFKGDTAKEAGAQFDYLENALQKFNGPFFLGEISQVDIVYIPFVERFQVFLLEAFKIDITEGRPKLAAWIEEFNKSDAYKQTKADPKLVVEVYTKRFLVTFALLHILHINAIFLKNLLTLLLC | 257 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1588222 | 1591488 | - | CmaCh06G003420.1 | Cma06g00342 | 295896 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g00342 | 257 | Pfam | Glutathione S-transferase, C-terminal domain | 143 | 205 | - | - | |
| Cma06g00342 | 257 | Gene3D | - | 104 | 235 | - | - | |
| Cma06g00342 | 257 | SFLD | Main (cytGST) | 28 | 208 | - | - | |
| Cma06g00342 | 257 | SFLD | Glutathione Transferase (cytosolic) | 28 | 208 | IPR040079 | - | |
| Cma06g00342 | 257 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 25 | 106 | IPR004045 | - | |
| Cma06g00342 | 257 | PANTHER | GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC | 3 | 232 | - | - | |
| Cma06g00342 | 257 | Pfam | Glutathione S-transferase, N-terminal domain | 29 | 105 | IPR004045 | - | |
| Cma06g00342 | 257 | Gene3D | Glutaredoxin | 1 | 103 | - | - | |
| Cma06g00342 | 257 | PANTHER | GLUTATHIONE S-TRANSFERASE L1 | 3 | 232 | IPR044629 | GO:0004364 | |
| Cma06g00342 | 257 | SUPERFAMILY | GST C-terminal domain-like | 102 | 231 | IPR036282 | - | |
| Cma06g00342 | 257 | SUPERFAMILY | Thioredoxin-like | 20 | 107 | IPR036249 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g00342 | Cma-Chr6:1588222 | Cma04g01230 | Cma-Chr4:6275107 | 1.67E-55 | dispersed | |
| Cma06g00341 | Cma-Chr6:1583631 | Cma06g00342 | Cma-Chr6:1588222 | 6.76E-130 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g00342 | K00799 | - | csv:101211241 | 434.876 |