Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00343 ATGTTTTCCTCTTTTTGGTTGGATGCTGCTGCTGAAGTTCGTCAAAGACTGCGAAAGGAGATTGAATTAAGTATGATTTGGATTCCTTGTTCTGGAGATTCAAATAGGAAGGTCAAGTCCAAGAAATTGAAGAACAAACCTGCTTTGGAGAACCTACAAACAAGTTCCTCCTTCAGTGAAGAACCCTCAAAAGGTGGAGGATCTGATCATATAAAGGCACAAATATTTCCATTCCGGGAGTTGGCCGCAGCTACCAGGAATTTTCGGGCAGACTGTCTCTTGGGCGAGGGAGGCTTTGGTAGAGTTTACAAAGGAAATTTGGAAAGCATCAATCAGGTAGTGGCAATCAAACAACTCGATCGAAATGGGTTGCAAGGGAACAGGGAGTTTCTCGTTGAAGTGTTGATGTTAAGCCTACTTCATCACCCAAATCTAGTTAATCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGGTATATGAATATATGCCTCTAGGATCCTTAGATGACCATTTACATGACGTTTCGCCTGGCACAAAAGTACTAGATTGGAATACTAGAATGAAAATAGCTGCTGGGGCAGCACGAGGATTGGAATATTTGCATGATAAAGCTAGCCCACCAGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAGCTGTCTGATTTTGGTTTGGCCAAACTTGGGCCTGTTGGGGACAATACTCATGTGTCTACCAGAGTTATGGGTACTTATGGATATTGTGCTCCCGAATATGCAATGACTGGCCAGTTAACTCTCAAGTCAGATGTTTATAGCTTCGGCGTTGTTCTTCTAGAGCTCATAACAGGCAGGAAGGCAATCGATGATTCAAGAGCTGCAGGGGAGCAAAATCTGGTTTCATGGGCAAGACCATTGTTTAATGATCGTCTGAGATTTGCACAAATGGCAGATCCAATGCTTAGAGGCCAACATCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTCCAAGAGCAGCCAAATATGCGTCCTGTGATCGCCGATGTCGTCACGGCTCTCTCCTATCTTGCTTCCCAAAGATACAACCCTAGTACGAGCATACCCCACGGCTCCCCTGCATCTGCCTTTACACCTCCAAGAAACAACAGAGATTCTGACAGGAAGCCTAATGGTGGTCGAAGATACGATAGAAATCACACTCGAAAGCTATAA 1239 43.74 MFSSFWLDAAAEVRQRLRKEIELSMIWIPCSGDSNRKVKSKKLKNKPALENLQTSSSFSEEPSKGGGSDHIKAQIFPFRELAAATRNFRADCLLGEGGFGRVYKGNLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLDDHLHDVSPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLELITGRKAIDDSRAAGEQNLVSWARPLFNDRLRFAQMADPMLRGQHPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYNPSTSIPHGSPASAFTPPRNNRDSDRKPNGGRRYDRNHTRKL 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1593759 1597220 + CmaCh06G003430.1 Cma06g00343 295897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00343 412 Pfam Protein tyrosine and serine/threonine kinase 93 361 IPR001245 GO:0004672|GO:0006468
Cma06g00343 412 SUPERFAMILY Protein kinase-like (PK-like) 74 377 IPR011009 -
Cma06g00343 412 PANTHER OS07G0668900 PROTEIN 25 400 - -
Cma06g00343 412 MobiDBLite consensus disorder prediction 372 389 - -
Cma06g00343 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Cma06g00343 412 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 25 400 - -
Cma06g00343 412 CDD STKc_IRAK 94 362 - -
Cma06g00343 412 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Cma06g00343 412 SMART serkin_6 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00343 412 MobiDBLite consensus disorder prediction 372 412 - -
Cma06g00343 412 Gene3D Phosphorylase Kinase; domain 1 58 164 - -
Cma06g00343 412 ProSiteProfiles Protein kinase domain profile. 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00343 412 Gene3D Transferase(Phosphotransferase) domain 1 165 376 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00343 Cma-Chr6:1593759 Cma06g01475 Cma-Chr6:9381522 0 dispersed
Cma11g01895 Cma-Chr11:12565768 Cma06g00343 Cma-Chr6:1593759 2.63E-109 dispersed
Cma14g00183 Cma-Chr14:761708 Cma06g00343 Cma-Chr6:1593759 0 wgd
Cma20g00451 Cma-Chr20:2135318 Cma06g00343 Cma-Chr6:1593759 3.50E-151 wgd
Cma04g00257 Cma-Chr4:1266414 Cma06g00343 Cma-Chr6:1593759 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68627 PF07714 PK_Tyr_Ser-Thr 7.30E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00343 - - csv:101211491 690.263