Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00347 ATGCTGAATCTTAACCACGACGTTGTTCCATCGGAGATGGTTACTGAGAGTTTTCTGAATTTTCCAGCGAACAGAATGGAAACCGCTGGATGTTTCAACTCGTCCTCCGTCGTTAATGGCGATCCTTCCGCCAGCACCACCAACGTCGACGAGGTTTTCCCGTTCACTATCGGTAAAAATTACGCGGTTCAAGAAAGCTCAACGGTGAAATCACTTTCTATTTCCGATGACCACTGCGACCAGACGATAGAGCTCTTCCCGTTAACGGACGGATTAAATTCTATTTCCGATGACCACCGCGACCAAACGAAGGAGTTCTTCCCGTTAACCGACGGATTAAATACTAGTTCGAGTACTCAGATGCAGTGGCCGGAGGTTTCTCCATCGGAATTCAATCATGGAGACGGCGGCGCACCGGCGCAGCCACAGGATCAGGCGATGAGGAAAAACAGACGTGGTCCAAGGCCTCGAAGTTCGCAGTATCGTGGCGTTACGTATTATCGTAGAACCGGGAGATGGGAATCGCATATTTGGGACTGCGGGAAACAGGTTTATTTGGGCGGTTTCGATACTGCTCATGCTGCCGCCAGAGCATATGATAAAGCGGCGATCAAGTTTCGGGGGGTCGACGCAGATATCAATTTCAGTGTCAGAAATTATGAAGAAGATATCAAACAGATGAGTAATATCACTAAGGAAGAGCTTATTCATAATCTTCGTCGCCGTAGCAATGGATTTACAAGAGGAAGCTCGAAGTACAGAGGAGTTACCTTGCATAAATGTGGTCGATGGGAAGCTCGGATGGGCCAGTTCTTAGGCAGGAAGTACATGTATCTTGGTCTCTTTGATAGTGAGATTGAAGCTGCAAGGTCTTCTTAA 879 47.67 MLNLNHDVVPSEMVTESFLNFPANRMETAGCFNSSSVVNGDPSASTTNVDEVFPFTIGKNYAVQESSTVKSLSISDDHCDQTIELFPLTDGLNSISDDHRDQTKEFFPLTDGLNTSSSTQMQWPEVSPSEFNHGDGGAPAQPQDQAMRKNRRGPRPRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDKAAIKFRGVDADINFSVRNYEEDIKQMSNITKEELIHNLRRRSNGFTRGSSKYRGVTLHKCGRWEARMGQFLGRKYMYLGLFDSEIEAARSS 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1612143 1614532 + CmaCh06G003470.1 Cma06g00347 295901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00347 292 CDD AP2 159 215 IPR001471 GO:0003700|GO:0006355
Cma06g00347 292 ProSiteProfiles AP2/ERF domain profile. 252 292 IPR001471 GO:0003700|GO:0006355
Cma06g00347 292 MobiDBLite consensus disorder prediction 108 127 - -
Cma06g00347 292 CDD AP2 251 291 IPR001471 GO:0003700|GO:0006355
Cma06g00347 292 Pfam AP2 domain 251 290 IPR001471 GO:0003700|GO:0006355
Cma06g00347 292 Pfam AP2 domain 160 208 IPR001471 GO:0003700|GO:0006355
Cma06g00347 292 SUPERFAMILY DNA-binding domain 251 290 IPR016177 GO:0003677
Cma06g00347 292 MobiDBLite consensus disorder prediction 108 162 - -
Cma06g00347 292 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 291 - -
Cma06g00347 292 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 291 - -
Cma06g00347 292 SMART rav1_2 252 292 IPR001471 GO:0003700|GO:0006355
Cma06g00347 292 SMART rav1_2 160 222 IPR001471 GO:0003700|GO:0006355
Cma06g00347 292 Gene3D AP2/ERF domain 251 291 IPR036955 GO:0003700|GO:0006355
Cma06g00347 292 Gene3D AP2/ERF domain 159 218 IPR036955 GO:0003700|GO:0006355
Cma06g00347 292 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700|GO:0006355
Cma06g00347 292 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01236 Cma-Chr4:6333575 Cma06g00347 Cma-Chr6:1612143 1.78E-66 dispersed
Cma06g00347 Cma-Chr6:1612143 Cma14g00185 Cma-Chr14:775692 1.53E-09 dispersed
Cma02g00857 Cma-Chr2:5007350 Cma06g00347 Cma-Chr6:1612143 1.89E-87 wgd
Cma20g00457 Cma-Chr20:2186182 Cma06g00347 Cma-Chr6:1612143 1.39E-86 wgd
Cma04g00262 Cma-Chr4:1293232 Cma06g00347 Cma-Chr6:1612143 8.53E-60 wgd
Cma06g00347 Cma-Chr6:1612143 Cma07g00939 Cma-Chr7:4516453 5.76E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35158 PF00847 AP2 1.80E-10 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00347 K09284 - csv:101211242 382.489