Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00349 ATGGAGGCTAAGTTTCAGTTTCTGTTTCTTCTCTTTCTTTTTGATGTCTCCTTTGCTCAGATGCCAGGTTTTGTAAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGATGACATTGGTTTGGAATGGGTTCCAGATACTCAAGTTCGTTTTGGAGAAGCAATTAACCTATCTGTTGCAAATGAGACGAGGAAGCAATACAGGACCTTAAGACACTTCCCTGCTGATTCCAGGAAGTACTGTTACTCACTCAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTGTATGGTAACTTCGACAACAATAACGTGTATCCAAAATTTGACATTTCCCTTGGGGCAACTCACTGGACAACAATTGTCATATCTGACGCCAACACCATAAAGGTTCGAGAGATCATATTTCTGGCTTCAACTGCTACTGTGAGTGTTTGTTTGTCAAATGCCACAACTGGGCAGCCATTCATATCCACGCTTGAGCTTCGACAATTTAATGGCTCTACCTACTATACTGAATTTGAGGATCAGTTTTTCCTAAGTGTCTCGGCAAGGATCAATTTTGGAGCAGATTCCGAAGCCCCAGTAAGGTATCCTGATGACCCTTTTGACCGGATATGGGAGTCTGACTCTGTGAGAAAAGCAAATTTTCTTGTTGATGTTGCTGCTGGTACTGAAAAAGTTTCCACTAAAATGCCAATAGATGTCAATAGAGATGAAAGACCACCTCAAAAAGTTATGCAGACGGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGTTTGAATTTGGATGGTTTTCCTGGCTTTGGATGGGCATTCACCTACTTTGCAGAAATTGAAGACTTGGGTCCTACTGATACGAGAAAATTCAGGCTTCTACTTCCCGGCATGCCTGAAATCAGCAAAGCTGTAGTCAACATTGAAGAAAATGCTCAAGGAAAATATCGGCTTTATGAGCCTGGTTTTACCAACATAACCTTCCCTTTTGTATTATCTTTTAGGTTTGGGAAAACATCAGATTCTGTGTTGGGACCTCTGTTAAATGCCATGGAGATTAACAAGTATCTTGAAAAAAGTGATGGTTCTCTAGATGGAGCAGTTGTTGCTAGTGTAATTTCAAAATTATCATCTTCAGATTTGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAGTGTAACTCTGATCCACAGCCAAGAATAGTTAAAATTTTATTGTCCAAAAAGAATTTGACAGGGAACATCCCTACAGACGTTGCAAAGTTGAACAGTTTAGTTGAATTGTGGCTTGATGGAAATTTATTTGTTGGTCCTATACCCGATTTTACTGGCTGTGTGAACTTGAAAATCCTCCATCTTGAGAACAATCAGTTGACGGGGGAGTTGCCTTCCTCATTAGTAAATCTTCCTAGTCTACGGGAGCTGTATGTGCAGAATAACATGTTATCTGGAACAGTGCCTTCCGGTCGTCTAAGAAAGGATCTAACTTTAGTCTACTCTGGAAACATTAATCTTCATGAAGGGGGGAAAAAGAACCACATTTATATCATTTTGGGTTCTGTAATTGGTGCTCTTGTCCTGCTCTTGGCAACTGTGGTATCTTGCTACTTTTTGCAAAGAAGAAGAAGAAAATCTCGTGAGCGAGCTGATGTACTTGAAGAATCCAAGCCTGCACAAAAATTTGCCTCTTCAAAGGGCGATGCTCCCAAGGAAACCGCACATTGCTTCAGTGTTAAAGAAATTGAAGAAGCAACAAGAGGTTTTGAAAGAAAAATTGGGTCTGGAGGTTTTGGTGTTGTATACTACGGGAAATTAAATGATGGAAAAGAAATTGCAGTTAAAGTCTTGACTAGTAACTCCTTCCAGGGAAAGCGAGAATTTACAAATGAGGTGACTCTTCTTTCGAGGATTCATCACAGAAATCTTGTACAATTTCTTGGATATTGTCAAGAAGTAGATAGAAGTATGCTTGTCTATGAGTATATGCACAATGGAACTCTCAAGGAACATCTTTATGCTCCACTAACACGTGGAAGAACTATCAGTTGGATAAAGCGCCTTCAGATTGCTGAAGACGCTGCCAGAGGGATCGAATACCTTCACACAGGGTGTATACCGGCAATTATTCATAGGGACTTGAAAAGCAGTAATATTCTTCTTGACCGACACATGAGAGCAAAGGTTTCAGATTTCGGTCTGTCAAAGCTTGCCGTGGATGGCGCCTCCCACGTGTCCAGCATAGTTCGGGGGACTGTCGGATACTTGGATCCAGAGTATTATATTTCTCAGCAATTGACCGACAAGAGTGATGTATATAGCTTCGGTGTTATTCTTCTCGAGTTGATATCCGGTCAAGAAGCTATATCTAACGTCAACTTTGGTGCTAATTGCCGCAACATCGTCCAGTGGGCAAAACTACACATCGAGAGCGGCGACATTCAAGGGATCATCGATCCATCGCTACGCTTCGAGTACGACATTCAATCTATGTGGAAAATTGCAGAGAAGGCGTTGATGTGTGCCCAGCCACATGGGCACCTGAGGCCATCCATGTCTGAAGTGCTCAAGGAGATACAGGATTCAATCTTGATTGAAAGAGAACCTCTTGCAAGAGAAGGTAACTCTGACGAAATTTCTGGAAATTCAGTCCACTCTACGAATATAGGACCTCTTGATTTGCGTGCAAATGAAAACTACTTGTCGTTTGACGAATCCATTGCTCGACCTCTTGCAAGGTAG 2763 41.69 MEAKFQFLFLLFLFDVSFAQMPGFVSLDCGGQESFTDDIGLEWVPDTQVRFGEAINLSVANETRKQYRTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWTTIVISDANTIKVREIIFLASTATVSVCLSNATTGQPFISTLELRQFNGSTYYTEFEDQFFLSVSARINFGADSEAPVRYPDDPFDRIWESDSVRKANFLVDVAAGTEKVSTKMPIDVNRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAFTYFAEIEDLGPTDTRKFRLLLPGMPEISKAVVNIEENAQGKYRLYEPGFTNITFPFVLSFRFGKTSDSVLGPLLNAMEINKYLEKSDGSLDGAVVASVISKLSSSDLDEGGDPCMPVPWSWLQCNSDPQPRIVKILLSKKNLTGNIPTDVAKLNSLVELWLDGNLFVGPIPDFTGCVNLKILHLENNQLTGELPSSLVNLPSLRELYVQNNMLSGTVPSGRLRKDLTLVYSGNINLHEGGKKNHIYIILGSVIGALVLLLATVVSCYFLQRRRRKSRERADVLEESKPAQKFASSKGDAPKETAHCFSVKEIEEATRGFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGKREFTNEVTLLSRIHHRNLVQFLGYCQEVDRSMLVYEYMHNGTLKEHLYAPLTRGRTISWIKRLQIAEDAARGIEYLHTGCIPAIIHRDLKSSNILLDRHMRAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNVNFGANCRNIVQWAKLHIESGDIQGIIDPSLRFEYDIQSMWKIAEKALMCAQPHGHLRPSMSEVLKEIQDSILIEREPLAREGNSDEISGNSVHSTNIGPLDLRANENYLSFDESIARPLAR 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1616971 1623473 + CmaCh06G003490.1 Cma06g00349 295903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00349 920 SMART serkin_6 594 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00349 920 SUPERFAMILY L domain-like 393 499 - -
Cma06g00349 920 ProSiteProfiles Protein kinase domain profile. 594 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00349 920 CDD STKc_IRAK 600 867 - -
Cma06g00349 920 Pfam Leucine rich repeat 450 490 IPR001611 GO:0005515
Cma06g00349 920 ProSitePatterns Protein kinases ATP-binding region signature. 600 622 IPR017441 GO:0005524
Cma06g00349 920 PANTHER TYROSINE KINASE DOMAIN PROTEIN 10 904 - -
Cma06g00349 920 Gene3D Ribonuclease Inhibitor 370 518 IPR032675 -
Cma06g00349 920 Gene3D Transferase(Phosphotransferase) domain 1 670 880 - -
Cma06g00349 920 Pfam Malectin-like domain 27 357 IPR024788 -
Cma06g00349 920 Pfam Protein tyrosine and serine/threonine kinase 596 800 IPR001245 GO:0004672|GO:0006468
Cma06g00349 920 PANTHER OS07G0107800 PROTEIN-RELATED 10 904 - -
Cma06g00349 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 716 728 IPR008271 GO:0004672|GO:0006468
Cma06g00349 920 Gene3D Phosphorylase Kinase; domain 1 568 669 - -
Cma06g00349 920 SUPERFAMILY Protein kinase-like (PK-like) 581 868 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01805 Cma-Chr4:9099762 Cma06g00349 Cma-Chr6:1616971 0 dispersed
Cma06g00349 Cma-Chr6:1616971 Cma18g00724 Cma-Chr18:6549239 0 dispersed
Cma14g00188 Cma-Chr14:792274 Cma06g00349 Cma-Chr6:1616971 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68628 PF12819 Malectin_like 7.00E-78 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00349 - - csv:101212456 1655.57