Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00350 ATGGCTGATGCTCCGGCGAGCCCCGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCTAATATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACCTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCAGCTAAGAAAGAAGCTCATCCAACCCCTGGTGCCCAGGTTGCTCATCAAGGGACGTTTTCCCAAGGAGTTAATTATGGAAGTTCTCAAAGAATAATTTGA 483 46.58 MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHPTPGAQVAHQGTFSQGVNYGSSQRII 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1625029 1629019 + CmaCh06G003500.1 Cma06g00350 295904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00350 160 SUPERFAMILY Histone-fold 27 126 IPR009072 GO:0046982
Cma06g00350 160 MobiDBLite consensus disorder prediction 141 160 - -
Cma06g00350 160 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Cma06g00350 160 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cma06g00350 160 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cma06g00350 160 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cma06g00350 160 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cma06g00350 160 Gene3D Histone, subunit A 16 150 IPR009072 GO:0046982
Cma06g00350 160 MobiDBLite consensus disorder prediction 117 160 - -
Cma06g00350 160 MobiDBLite consensus disorder prediction 1 28 - -
Cma06g00350 160 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 155 - -
Cma06g00350 160 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01239 Cma-Chr4:6346452 Cma06g00350 Cma-Chr6:1625029 2.48E-77 dispersed
Cma06g00350 Cma-Chr6:1625029 Cma14g00188 Cma-Chr14:792274 2.55E-99 dispersed
Cma04g00263 Cma-Chr4:1297081 Cma06g00350 Cma-Chr6:1625029 1.94E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35159 PF00808 CBFD_NFYB_HMF 6.60E-28 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00350 K08065 - csv:101212699 296.204