Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00352 ATGGAAAATGTCCGGAGATCATACCGAGCGAAGATAGGCATGGAGCAAGCGTTTTCAGACTTCGACATAGCTGGAGACATCTTTGATTTGTACTTCCCTCATACTGTCTTCACTGTCGAAAATGAATGGCTTAAGCTCATTTCTCAGCTTATTTTCTTCTTTTCTTCTCCGGCAGGTCGGCATCTTGCTTCACAGGCTATTGATGATGGTCGTGGCATCTTTATTTTGTCAATTGACTTTCAACAGTTCCGAAAGATTTGCGATGAACATGAATTATACCTAATGTTAGAGAAAGATCCTAAAGTTGCTCTCAAATGTATGAGTGCTGCACTTCACCAGGTAATGAGGACCAAATGGGCGCACAATTTAGAAGTTGTCGCAAAAATTCTAGTCCGGTTGCACAACTATTCAGAATCCATGCTTGCTTTGAAGAACTTGAAGGCAGCATATATTGACAAGCTTGTATCAGTGCGTGGTACTGTTGTTAAAGTTAGCACTGTTAAGCCTTTGGTGGTGCAAATGAGCTTTGATTGTGCTAAATGTAAAAGCAATATCACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGCTGGATGGGTGCAAAAGCAAAACATTTATTCCCATTCGATCTACAGCTGAAGCAATTGACTTCCAGAAAATACGGTTGCAAGAACTCACTAAATCTGATGACCATGAAGAAGGAAGGGTGCCTCGAACTGTAGAATGTGAACTGACTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATCATAAAAGTAATTAACAATTACATGGATATTGGAGGAGGAAAATCGAAGGGCAAAAGTCAAGGATTGTACTATTTGTATCTGGAGGCTGTTTCAATAAAAAATTCCAAGTCACAATCTTCACCTGAGGAGATGCAAGATTCTAACTCTAATGCAAGAGCAACGGAGTTGCTTGACTTATTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTCTCTGGGGAATATGGTTCCGATGTTTTCCGTCAAATACTTCAATCTATATGTCCATCCATCTATGGACATGAACTTGTTAAAGCTGGAATAACACTAGCTCTATTCGGTGGTGTTCGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGTCATAGTTGTTGGTGATCCTGGACTTGGCAAAAGTCAAATACTGCAAGCAGCTGCAGCTATTTCTCCACGTGGAATTTATGTTTGTGGTAATGCAACAACCAAGGCGGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGGGCTATGGTACTTGCAGATGGTGGATTATGCTGTATAGATGAGTTTGATAAAATGTCTGCAGAACATCAGGCCCTATTGGAAGCCATGGAACAACAATGTGTATCGATTGCAAAAGCTGGCTTGGTAGCAAGTCTATCAGCACGTACTTCTGTTTTAGCTGCAGCTAACCCTGTTGGCGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGAGCTGCTCTTCTCTCGAGATTTGATTTAGTTTTCATATTGCTGGATAAACCTGACGAATTTCTGGATAAGAGAGTCTCAGAGCACATCATGTCGCTTCATGCAGGATATGGGGAACGCGCTTCTACAGCAAAAAGATTACGCAAAGATATATCTCCTTTGGCATTAAAGAATGTACCAATGGAGAATGATGGAAAAGGAGGTGCTTGTTCAAAAGGCGAGTCTTTAGTTTCAAGACTGAGATTGGACCGAGCGAAAGATAGCGATTTTGTACCATTACCTGGGCAACTTCTTCGCAAATATATAGCCTATGCAAGAACTTTTGTTTTCCCCAGGATGTCAAAGCCGGCAGCGGACATTTTGCAAAGATTTTACTTACAACTGCGTGACCAGAATACATCAGCTGATGGTACACCAATTACAGCAAGGCAACTCGAAAGTCTGGTGAGGCTGGCAGAAGCTCGAGCACGAGTAGACCTCAGGGAAGAAATTACAGTACAGGATGCCATGGATGTTGTAGAAATAATGAAGGAATCCCTTTATGACAAGTACGTAGATGAACATGGAGTCCTGGATTTTGGTCGAAGTGGGGGAATGAGTCAGCAGAAAGAAGCCAAGCGATTTTTAAGTGCACTCAACAAGCAATCAGATTTGCAGCAGAAAGATTGTTTCTCCATCTCCGAAATATATATCTTGGCAGATAGGATTGGTCTGCAAGTACCCGACATTGATACCTTCATAGAAAATCTTAACAGTGTTGGATATCTGCTTAAGAAGGGACCAAAGACATATCAGGTGCTATCCTCGTCTTACACCAGTCAATCTACAAGGTCTAGGGGATAA 2421 41.59 MENVRRSYRAKIGMEQAFSDFDIAGDIFDLYFPHTVFTVENEWLKLISQLIFFFSSPAGRHLASQAIDDGRGIFILSIDFQQFRKICDEHELYLMLEKDPKVALKCMSAALHQVMRTKWAHNLEVVAKILVRLHNYSESMLALKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFIPIRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIKVINNYMDIGGGKSKGKSQGLYYLYLEAVSIKNSKSQSSPEEMQDSNSNARATELLDLFSFSPRDLEFIVKFSGEYGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQILQAAAAISPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMRAALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGYGERASTAKRLRKDISPLALKNVPMENDGKGGACSKGESLVSRLRLDRAKDSDFVPLPGQLLRKYIAYARTFVFPRMSKPAADILQRFYLQLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVQDAMDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSDLQQKDCFSISEIYILADRIGLQVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1638517 1645124 - CmaCh06G003520.1 Cma06g00352 295906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00352 806 SMART AAA_5 393 545 IPR003593 -
Cma06g00352 806 Gene3D - 327 715 IPR027417 -
Cma06g00352 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 712 IPR027417 -
Cma06g00352 806 Pfam MCM AAA-lid domain 623 706 IPR041562 -
Cma06g00352 806 Pfam MCM P-loop domain 347 560 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g00352 806 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 16 801 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma06g00352 806 SUPERFAMILY Nucleic acid-binding proteins 71 273 IPR012340 -
Cma06g00352 806 Gene3D - 170 220 - -
Cma06g00352 806 Gene3D - 143 273 IPR012340 -
Cma06g00352 806 PRINTS Mini-chromosome maintenance (MCM) protein family signature 392 407 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g00352 806 PRINTS Mini-chromosome maintenance (MCM) protein family signature 452 466 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g00352 806 PRINTS Mini-chromosome maintenance (MCM) protein family signature 479 492 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g00352 806 PRINTS Mini-chromosome maintenance (MCM) protein family signature 503 515 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g00352 806 PRINTS Mini-chromosome maintenance (MCM) protein family signature 530 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g00352 806 SMART mcm 139 707 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma06g00352 806 ProSiteProfiles MCM family domain profile. 349 556 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma06g00352 806 PANTHER DNA HELICASE MCM8 16 801 - -
Cma06g00352 806 Pfam MCM OB domain 143 272 IPR033762 -
Cma06g00352 806 Coils Coil 464 484 - -
Cma06g00352 806 CDD MCM8 353 705 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00352 Cma-Chr6:1638517 Cma14g01060 Cma-Chr14:5671365 4.97E-90 dispersed
Cma14g00193 Cma-Chr14:820515 Cma06g00352 Cma-Chr6:1638517 5.52E-41 transposed
Cma14g00192 Cma-Chr14:819285 Cma06g00352 Cma-Chr6:1638517 2.78E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00352 K10737 - csv:101211972 1424.45