Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00359 ATGGGAAGGAAAGGAAATTGGTTTAAAACTTTGAAGAAAGCTCTCAGCCCCAGCTCCAAAAGGAAGAAAGACCAGAAAACTAAATTGTCTGGAAAACAAAAACACCCCAGTGTATGTTCTACTCCTACATTGACTATTGCAAATCAGATAACTCAGCAAGAAAAGGTAAAATCGACCTGTGAGGAGAATGAAGACCACTGCAAAGCTCATTCTGTTCCAATTTCGAATTCCACGGGCATGGCTTCTACAGCTGGCACACAGGTTGTCCAGACCACTACTGTGACTCAATTCACCAGAAAATCTAGAGAGGAAACGGCAGCAATCAAGATTCAATCAGTTTTTCGTGGATATCTGGCAAGATCAGAAATACGAACCTTAAGAGGGCTGTTGAGGTTGAAATTATTGATGGAGAGTTCAGTTCTGAATCGTCAAGCCATGAACACCATCCGGTGTATGCAAGTTTTTGTCCGTGTCCATTCCCAGATCCGATCAAGAAGGTTGAGGAAGCTGGAGGAAAATCAGGCTCTCCAGAAACAACTCCTACAAAAACATACAAAAGAACAAGAGACTTCTCAGGTTGGGAAAGGGTGGAACGACAGCACACAATCAAAGGAGCAAGTTGAGGCTAAACTACTAAGCAAGCATGAAGCAGCTATGAGAAGAGAGAGAGCATTGGCTTATGCCTTTTCTCGACAGAAAATCTGGAGAAATTCTTCGAGGTCAACAATTACACTATTCACAGATCCGAACAATCCCACCTGGGGATGGAGCTGGTTGGAGAGATGGATGGCAGCTCAACAATGGGGGGATGCGAGCCCTGGTAATGTTTGTGGAGAAATTAATAAAGCCGATGCTCAATCCAAACAGAGCTCGGAGATAAATTCGCCAACAGTAAGCCGATCTGAAAGCCGTAGATATACCTTCCAGCCCCTCACGATTCATTCCAGACGTAGATCAGTGGCAGAGGCGAATCAACTGAAGCCATCAAGCACACGAAAGAGCTCAGTTCTAGATGATTCTCTCGAAGCTAATGCTCAATTTGAACTGAGCTCGGAGGCGAATTCGTCAACAGCAAGCCGATCCGAGAGCCGCAGGTATACTTTCCAGTCCTTCTCAACTTCTTCCAGACAAAGTTCAGTCGCAGAGCCAAAGAAATTGAAATCATCAACCATAAAAAAGAACTCGGTTCCAGAAATTGAAGGATTCCAGCTGACCTCGAAGGCAAATTCGCCAACAGCAAGTCGATCCGAGAGCCACAGATATACCTTCCCGTCCCTCTCAACGCCTTCTCCGCGAAGATCAGTCGCAGAGGCAATGAAATCAAAGCAATTAGGCGCCAGAAATAGCACGATTCCAGATGATGACAGCAAGAGCCTGGCAAGTATAAAATCAAACAATGGAGGACCTCGATCATCCGTATGGGACGAAGAAAGCCAAAACAGTTCACAAAATTTTCCGAGTTACATGACGTTCACCTCATCGGCAAGAGCCAAATCGAAGCTTCATACTCCATTTGAGTTGGAGAAGAATGAAGCTCGAGAAATAACGTCGTTTAGTTCATCTGCTAAGAAACAACTCTTGTATCCGCCATCTCCGGCCGGGTCGAGGCGCTATTTCAACCGTCTGAAGGTGGATATAGCGGCTTGA 1647 45.29 MGRKGNWFKTLKKALSPSSKRKKDQKTKLSGKQKHPSVCSTPTLTIANQITQQEKVKSTCEENEDHCKAHSVPISNSTGMASTAGTQVVQTTTVTQFTRKSREETAAIKIQSVFRGYLARSEIRTLRGLLRLKLLMESSVLNRQAMNTIRCMQVFVRVHSQIRSRRLRKLEENQALQKQLLQKHTKEQETSQVGKGWNDSTQSKEQVEAKLLSKHEAAMRRERALAYAFSRQKIWRNSSRSTITLFTDPNNPTWGWSWLERWMAAQQWGDASPGNVCGEINKADAQSKQSSEINSPTVSRSESRRYTFQPLTIHSRRRSVAEANQLKPSSTRKSSVLDDSLEANAQFELSSEANSSTASRSESRRYTFQSFSTSSRQSSVAEPKKLKSSTIKKNSVPEIEGFQLTSKANSPTASRSESHRYTFPSLSTPSPRRSVAEAMKSKQLGARNSTIPDDDSKSLASIKSNNGGPRSSVWDEESQNSSQNFPSYMTFTSSARAKSKLHTPFELEKNEAREITSFSSSAKKQLLYPPSPAGSRRYFNRLKVDIAA 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1669757 1673249 - CmaCh06G003590.1 Cma06g00359 295913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00359 548 MobiDBLite consensus disorder prediction 392 434 - -
Cma06g00359 548 MobiDBLite consensus disorder prediction 273 303 - -
Cma06g00359 548 MobiDBLite consensus disorder prediction 1 38 - -
Cma06g00359 548 MobiDBLite consensus disorder prediction 319 338 - -
Cma06g00359 548 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 423 545 - -
Cma06g00359 548 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 316 - -
Cma06g00359 548 MobiDBLite consensus disorder prediction 443 487 - -
Cma06g00359 548 Coils Coil 167 187 - -
Cma06g00359 548 MobiDBLite consensus disorder prediction 348 385 - -
Cma06g00359 548 MobiDBLite consensus disorder prediction 282 303 - -
Cma06g00359 548 SMART iq_5 102 124 IPR000048 GO:0005515
Cma06g00359 548 MobiDBLite consensus disorder prediction 191 207 - -
Cma06g00359 548 MobiDBLite consensus disorder prediction 181 208 - -
Cma06g00359 548 Gene3D - 92 133 - -
Cma06g00359 548 PANTHER IQ-DOMAIN 5-RELATED 423 545 - -
Cma06g00359 548 PANTHER IQ-DOMAIN 5-RELATED 1 316 - -
Cma06g00359 548 MobiDBLite consensus disorder prediction 348 487 - -
Cma06g00359 548 Pfam IQ calmodulin-binding motif 106 123 IPR000048 GO:0005515
Cma06g00359 548 ProSiteProfiles IQ motif profile. 103 131 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00359 - - - cmax:111498714 1015.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00359 Cma07g00937 CCT
Cma06g00359 Cma07g00937 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02600 Cma-Chr4:17780558 Cma06g00359 Cma-Chr6:1669757 5.55E-09 dispersed
Cma06g00359 Cma-Chr6:1669757 Cma15g00434 Cma-Chr15:1943695 6.68E-09 dispersed
Cma03g01253 Cma-Chr3:8249643 Cma06g00359 Cma-Chr6:1669757 2.25E-18 wgd
Cma06g00359 Cma-Chr6:1669757 Cma07g00937 Cma-Chr7:4504725 6.12E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g606 . . . . Bpe04g01589 . . Bma10g00020 Cmo06g00353 . . Cma07g00937 Car03g01126 Car07g00918 . Cpe10g00203 . Bhi03g01672 . . . Hepe04g0914 . . Cla04g00869 Cam04g0841 Cec04g1024 Cco04g1083 Clacu04g0929 Cmu04g0918 Cre01g0429 . . Cone13ag1287 Cone19ag1272 Lsi01g01363 Csa04g01422 Chy08g00816 Cme04g02549 Blo07g01409 Blo09g00550 Bda03g01731 Bda05g01241 . . . . Sed04g1336 . Cmo07g00981 Cma06g00359 . Car06g00308 . . Cpe19g00400 Bhi11g02125 Tan08g1905 Cmetu04g2215 . Hepe05g0240 . . Cla10g01948 Cam10g2014 Cec10g2056 Cco10g2042 Clacu10g2021 Cmu10g2771 Cre10g2162 Lsi03g02046 Csa03g03255 Chy04g02086 Cme08g02328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01355 CCT,CST,ECH 99 267 IQD Protein Family AT3G09710 55.2 4.6e-47 186.4
Cma06g00359 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.5e-61 232.6
Cma15g00434 CCT,CST,ECH 2 464 IQD Protein Family AT3G52290 54.5 6.7e-101 365.2
Cma04g02600 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.7 1.1e-100 364.4
Cma10g00857 CCT 1 394 IQD Protein Family AT3G22190 56.8 1.1e-92 337.8
Cma11g00912 CCT 43 448 IQD Protein Family AT3G22190 55.0 5.8e-89 325.5
Cma01g01729 . 1 434 IQD Protein Family AT2G26180 59.5 3.9e-114 409.1
Cma09g00343 . 1 438 IQD Protein Family AT2G26180 58.0 1.1e-111 401.0
Cma07g00203 . 1 279 IQD Protein Family AT2G33990 51.6 4.0e-64 242.3
Cma16g00415 . 40 223 IQD Protein Family AT2G33990 52.9 1.2e-47 187.6
Cma07g00203 . 1 253 IQD Protein Family AT3G15050 51.4 7.7e-60 228.0
Cma16g00415 . 43 216 IQD Protein Family AT3G15050 61.0 4.1e-53 205.7
Cma06g00946 . 1 500 IQD Protein Family AT4G00820 55.7 8.8e-127 451.4
Cma06g00946 . 1 500 IQD Protein Family AT1G01110 52.7 4.0e-124 442.6
Cma08g00741 CCT,CST,ECH 220 616 IQD Protein Family AT3G16490 51.6 5.9e-72 268.9
Cma17g00759 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 51.5 4.2e-70 262.7
Cma10g00673 CST 1 376 IQD Protein Family AT3G16490 53.1 5.2e-68 255.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013853 0 1 0 0 0 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00359 Cma_Chr06 FPKM 0.210241 0.0 0.994467 1.209146 5.095527 3.495504 4.977472 0.0 0.0 0.0