Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g00370 | ATGTCAAGTAATCCTTTTTCTCTTCTCTCTTCCACTACCACTCCCTTTGCTCCACACCAAGATGCTAACCCTAAATCGAAACCCTCGTTCGCAACGAAGAAGAAACGCAACCTCCCGGGAACACCAGATCCAGATGCTGAGGTTATTGCTTTGTCGCCGAAATCGCTCATGGCGACGAATAGATTCGTATGCGAAATTTGCAACAAGGGTTTTCAAAGAGATCAGAATCTACAGCTTCACCGACGAGGGCATAACCTTCCGTGGAAGCTACGACAACGGACGAACAAGGAGATGATCAAGAAGAAGGTGTATATATGCCCGGAGAAGACATGCGTTCATCATGATCCGTCGCGAGCCCTCGGTGACTTGACCGGGATAAAGAAACATTTCAGTAGGAAACACGGCGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATACGCTGTTCAATCCGATTGGAAAGCTCACTCCAAAACTTGTGGGACTCGAGAATATAAGTGCGATTGTGGAACTCTTTTTTCTCGGAAAGACAGCTTCATAACCCACAGAGCATTTTGTGATGCTTTAGCTGAAGAAAGTGCAAGAATCACAACAATTTCAGCAACAAATATTCTCAATAATTTAAGAAATGATTCAATTGTTCTTCATCAACAAGAACAAAACAATCTTGAATCTCTTGGAGATGTTCCTGGGCTTTCCCAATTCAGTAATTCAGATAATTTCTTGAGAGATTTTGAAGAACAGCAACACAAGAACAGATCTCCATTGTCCCTTTGGTTAAACCAAGCTTCTGTTGATAATGCAATGAACAACAACAACATTTCCCACTTTTTTGGAGCTTCTTCTTCCTCTTCCAATCTTTTCGGATCGATGACCGAAAGCGGGCTTTCGGTATTGCCAGTGATTGAGAAGGAAGACGTTGAGAATAAGGGAAGTGTGTCGAAGGCTACGGCGGCCGCCGCATTGTTAGGTCAATCTTCTCAGTCGTTTGTTTCGTCTTCTCCGATGTCGGCCACTGCCCTTCTACAAAAAGCTGCTCTTATGGGCTCTACTAGAAGCAGCAACAATAATAATTCTCAGCTCTTTGGAGCTGGCACGTTCGGAGTAATGAGCTCATCGTCTTCGTCGTTGAACTCGTTTAATAAATCTAGAAGCCCGACGATGGCCGACTCGGTGCAGATGGTCGGTAACAACTCCAACTTGAGCTCGGATTGTCTCAACCAACTTCTACTACCACCAAATGATAGTAACAAAATGAGAAGCAGCGGTCAAACGAGGGATTTCCTCGGTGTCGGAGGAGGAGAAGCGCCTCGGCCACCGTTCCTCCCGCCGGAGCTTGCAAAATTCGCCGCCATAAACTCAACAATGGGACTAAGCCAATTCAACCACTAA | 1395 | 44.95 | MSSNPFSLLSSTTTPFAPHQDANPKSKPSFATKKKRNLPGTPDPDAEVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEMIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTISATNILNNLRNDSIVLHQQEQNNLESLGDVPGLSQFSNSDNFLRDFEEQQHKNRSPLSLWLNQASVDNAMNNNNISHFFGASSSSSNLFGSMTESGLSVLPVIEKEDVENKGSVSKATAAAALLGQSSQSFVSSSPMSATALLQKAALMGSTRSSNNNNSQLFGAGTFGVMSSSSSSLNSFNKSRSPTMADSVQMVGNNSNLSSDCLNQLLLPPNDSNKMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFAAINSTMGLSQFNH | 464 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1719002 | 1721032 | + | CmaCh06G003700.1 | Cma06g00370 | 295924 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g00370 | 464 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 64 | 84 | IPR013087 | - | |
| Cma06g00370 | 464 | Gene3D | Classic Zinc Finger | 58 | 85 | - | - | |
| Cma06g00370 | 464 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cma06g00370 | 464 | Gene3D | Classic Zinc Finger | 97 | 187 | - | - | |
| Cma06g00370 | 464 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 62 | 84 | IPR013087 | - | |
| Cma06g00370 | 464 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 13-RELATED | 21 | 438 | - | - | |
| Cma06g00370 | 464 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 21 | 438 | - | - | |
| Cma06g00370 | 464 | SUPERFAMILY | beta-beta-alpha zinc fingers | 61 | 159 | IPR036236 | - | |
| Cma06g00370 | 464 | SMART | c2h2final6 | 104 | 134 | IPR013087 | - | |
| Cma06g00370 | 464 | SMART | c2h2final6 | 62 | 84 | IPR013087 | - | |
| Cma06g00370 | 464 | SMART | c2h2final6 | 139 | 159 | IPR013087 | - | |
| Cma06g00370 | 464 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma06g00370 | Cma07g00934 | CCT | |
| Cma06g00370 | Cma07g00934 | ECH | |
| Cma06g00370 | Cma14g00204 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g00198 | Cma-Chr2:891185 | Cma06g00370 | Cma-Chr6:1719002 | 6.34E-108 | dispersed | |
| Cma06g00370 | Cma-Chr6:1719002 | Cma03g00762 | Cma-Chr3:5974951 | 8.46E-115 | dispersed | |
| Cma11g01799 | Cma-Chr11:12037177 | Cma06g00370 | Cma-Chr6:1719002 | 7.56E-107 | dispersed | |
| Cma13g00185 | Cma-Chr13:1415374 | Cma06g00370 | Cma-Chr6:1719002 | 1.87E-99 | dispersed | |
| Cma16g00651 | Cma-Chr16:3386134 | Cma06g00370 | Cma-Chr6:1719002 | 3.64E-110 | dispersed | |
| Cma18g00661 | Cma-Chr18:6056044 | Cma06g00370 | Cma-Chr6:1719002 | 1.27E-112 | transposed | |
| Cma14g00204 | Cma-Chr14:883176 | Cma06g00370 | Cma-Chr6:1719002 | 0 | wgd | |
| Cma06g00370 | Cma-Chr6:1719002 | Cma07g00934 | Cma-Chr7:4486189 | 1.41E-115 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35161 | None | None | None | None | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g00370 | K25870 | - | csv:101213422 | 739.184 |