Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00374 ATGGGTAACATTGGGAGTAGTGGTTCCCATGGCCGGAGACGACACGATTCCCGTCGGGGCCATCCGACTCCACCTCCACCTCCGCCGCCACAGCCCGAAATCACAAGTAATCGGTTCGTTTTCGCCGCTGCAACGCCGTACCCATCGCAATACACTAATCATCCGAATCAAGCGCCGCCGTACTATCAGTACCCTGGTTACTTTCCGCCGCCACCTGGTCCACCTCCGTCGATGCCGATGCCCTTGCCGGCGTCTTACGACCATCAACACCGCGCTGCCCATCCCCATATGGATCCTGCGCATTGGGTCGGTGGGAGATATCCTTACGGTCCTCCTATGCCGCCCCAAACGCCTTATGTTGAGCATCAGAAGGCGGTTACCATTCGAAATGATGTTAATCTCAAGAAAGAAACTCTTAGGGTTGAGCCCGACGAAGAAAACCCCGGCCAATTCCTTGTATCTTTCTTGTTCGATGCCACCGTCGCCGGGAGTATCACCATCTTCTTCTTTGCGAAAGAAGGCGAAGATTGTAACTTGACGCCCGTAAAAGAAGACACTTTTCAACCAGTGACTGTCCGTTTCGAACAAGGCCTCGGACAGAAGTACAGACAACCTTGTGGAACAGGAATAGATTTCTCAAAGTTCGAAGAGTCGGAGTTAGTGAAAGTAAATGACACAGATGTCTATCCACTAGCTGTGAAAGCCGAGGCTTCTACCGAAGGCCAAACTGGTCCCGATGGTACCGTGGTACCTGAGACCATGAATTCTCAGATAACACAGGCAGTGTTTGAGAAAGATAAAGGTGAATATCAGGTAAAAGTGTTGAAGCAAATCCTGTGGGTCAATGGTATGAGATATGAGCTGCAGGAGATCTATGGAATTGGAAATTCAGTCGAGGACGATGTCGATGGAAACGACCCTGGAAAGGAATGTGTCATTTGCTTGTCCGAACCACGGGATACGACTGTCCTTCCCTGCCGACACATGTGTATGTGTAGCGGTTGTGCTAAGGTTTTGAGGTTCCAGACGAATCGATGCCCGATTTGCAGACAACCGGTCGATAGGCTCTTAGAGATAAGGGTCAACAATGGGGCAGAAGAATAA 1104 50.54 MGNIGSSGSHGRRRHDSRRGHPTPPPPPPPQPEITSNRFVFAAATPYPSQYTNHPNQAPPYYQYPGYFPPPPGPPPSMPMPLPASYDHQHRAAHPHMDPAHWVGGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKETLRVEPDEENPGQFLVSFLFDATVAGSITIFFFAKEGEDCNLTPVKEDTFQPVTVRFEQGLGQKYRQPCGTGIDFSKFEESELVKVNDTDVYPLAVKAEASTEGQTGPDGTVVPETMNSQITQAVFEKDKGEYQVKVLKQILWVNGMRYELQEIYGIGNSVEDDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVNNGAEE 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1731335 1734420 - CmaCh06G003740.1 Cma06g00374 295928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00374 367 MobiDBLite consensus disorder prediction 1 68 - -
Cma06g00374 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 360 IPR013083 -
Cma06g00374 367 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 367 - -
Cma06g00374 367 SMART ring_2 311 349 IPR001841 -
Cma06g00374 367 MobiDBLite consensus disorder prediction 42 59 - -
Cma06g00374 367 Pfam Zinc finger, C3HC4 type (RING finger) 309 355 - -
Cma06g00374 367 SUPERFAMILY RING/U-box 310 356 - -
Cma06g00374 367 PANTHER MAHOGUNIN 1 367 IPR045194 GO:0061630
Cma06g00374 367 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 310 350 IPR045195 -
Cma06g00374 367 ProSiteProfiles Zinc finger RING-type profile. 311 350 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00374 Cma14g00207 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00374 Cma-Chr6:1731335 Cma06g01434 Cma-Chr6:9208912 3.22E-92 dispersed
Cma14g00207 Cma-Chr14:889938 Cma06g00374 Cma-Chr6:1731335 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00374 - - cmos:111461062 678.322