Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00375 ATGGCGAATAACGACATCGAAGTCGGATCTCGGGGGTCCCTTCCGAGGAAGGACTATTTCGAGCCGCTTCCGGCGCCAATGATCGATATGGAGGAGTTGGCCAAATGGTCCTTTTACAGAGCCATAATCGCCGAGTTTGTCGCCACTCTTTTGTTTCTCTACGTCGTCGTTTTGACGGTCATCGGTAATAAAACCCAGACCGATCCAATCATCGGCGGTAACCTCTGCGGCGGAGTTGGCACCCTCGGAATCGCCTGGGTCTTCGGCGGTATGATCTTCGTTCTCGTTTACTGCACCGCCGGCATCTCTGGAGGACACATAAACCCGGCGGTGACATTCGGAATGTTTCTGGGGAGAAAGATATCGTTGATTCGCGCCTTGCTCTACATTATAGCTCAGTGCTTGGGGGCGTTATGCGGCTGCGCCTTAGTCAAGTCACTACAGAGAGATCGCTACAACCACTATGGCGGTGCCGCCAACCAGCTCGTCGACGGCTACAGCAAGGGCACCGGTCTCGCCGTCGAGATCGTCGGCACCTTCGTCCTTCTCTACACCGTCTTCTCCGCCACCGATCCCAAACGCAACGCCCGAGATTCCTACGTTCCTGTGCTGGCTCCACTCCCCATTGGGTTCACTGTTTTCATGGTTCATCTCGCTACAATTCCGATCACTGGCACTGGCATCAATCCAGCTCGAAGCTTCGGCGCCGCCGTGATCATCAACGATAAAGAAATTTGGAAAGATCATTGGATCTTCTGGGTCGGGCCGCTGATCGGAGCAACCATTGCTACGATGTATTACCAGGCAGTCGCGATTCCGTCGGAATCTTCCAGTTTCTTCGCACCCGGCAATCTCTATCTACAGGAGAATATGGCAACTAGGGGTCAAGGTGGTATCCAACAATTGCTTGCAGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGAAATGCAAAATTGGCCAGACTGAAACAAGCCAAAGAAGAGGCTGAAAAGGAAATTGCTGCTTACCGTGCCCAAGTGGAGGCTGAGTTCCAAAGAAAACTCTCTGAGAGTAGCGGAGATTCAGGAGCTAATGTTAAGCGGCTTGAAGTCGAGACAGATGCAAAGATTGCGCACCTGAAAGAAGAGTGTGCTAGAATTTCATACGATGTCGTGGACATGCTCCTGAAGCATGTGACAACCGTGAAAAATTGA 1200 51.92 MANNDIEVGSRGSLPRKDYFEPLPAPMIDMEELAKWSFYRAIIAEFVATLLFLYVVVLTVIGNKTQTDPIIGGNLCGGVGTLGIAWVFGGMIFVLVYCTAGISGGHINPAVTFGMFLGRKISLIRALLYIIAQCLGALCGCALVKSLQRDRYNHYGGAANQLVDGYSKGTGLAVEIVGTFVLLYTVFSATDPKRNARDSYVPVLAPLPIGFTVFMVHLATIPITGTGINPARSFGAAVIINDKEIWKDHWIFWVGPLIGATIATMYYQAVAIPSESSSFFAPGNLYLQENMATRGQGGIQQLLAAEQEAQHIVNAARNAKLARLKQAKEEAEKEIAAYRAQVEAEFQRKLSESSGDSGANVKRLEVETDAKIAHLKEECARISYDVVDMLLKHVTTVKN 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1736779 1741766 - CmaCh06G003750.1 Cma06g00375 295929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00375 399 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Cma06g00375 399 Gene3D - 289 399 - -
Cma06g00375 399 Pfam Major intrinsic protein 33 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00375 399 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 271 IPR034294 -
Cma06g00375 399 TIGRFAM V_ATP_synt_G: V-type ATPase, G subunit 291 398 IPR005124 GO:0016471|GO:0046961|GO:1902600
Cma06g00375 399 PANTHER AQUAPORIN PIP2-4-RELATED 6 271 - -
Cma06g00375 399 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00375 399 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00375 399 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00375 399 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00375 399 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00375 399 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00375 399 SUPERFAMILY Aquaporin-like 31 276 IPR023271 -
Cma06g00375 399 Pfam Vacuolar (H+)-ATPase G subunit 296 398 IPR005124 GO:0016471|GO:0046961|GO:1902600
Cma06g00375 399 Gene3D Glycerol uptake facilitator protein. 25 279 IPR023271 -
Cma06g00375 399 CDD MIP 40 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma06g00375 399 Coils Coil 314 348 - -
Cma06g00375 399 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00375 Cma14g00208 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00375 Cma-Chr6:1736779 Cma03g01241 Cma-Chr3:8206142 4.00E-144 dispersed
Cma14g00208 Cma-Chr14:895299 Cma06g00375 Cma-Chr6:1736779 1.52E-66 wgd
Cma02g00891 Cma-Chr2:5289215 Cma06g00375 Cma-Chr6:1736779 1.16E-142 wgd
Cma20g00484 Cma-Chr20:2339049 Cma06g00375 Cma-Chr6:1736779 2.02E-144 wgd
Cma03g01240 Cma-Chr3:8202908 Cma06g00375 Cma-Chr6:1736779 3.50E-149 wgd
Cma06g00375 Cma-Chr6:1736779 Cma07g00926 Cma-Chr7:4445014 8.60E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00375 K09872 - csv:101214142 470.314