Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00375 | ATGGCGAATAACGACATCGAAGTCGGATCTCGGGGGTCCCTTCCGAGGAAGGACTATTTCGAGCCGCTTCCGGCGCCAATGATCGATATGGAGGAGTTGGCCAAATGGTCCTTTTACAGAGCCATAATCGCCGAGTTTGTCGCCACTCTTTTGTTTCTCTACGTCGTCGTTTTGACGGTCATCGGTAATAAAACCCAGACCGATCCAATCATCGGCGGTAACCTCTGCGGCGGAGTTGGCACCCTCGGAATCGCCTGGGTCTTCGGCGGTATGATCTTCGTTCTCGTTTACTGCACCGCCGGCATCTCTGGAGGACACATAAACCCGGCGGTGACATTCGGAATGTTTCTGGGGAGAAAGATATCGTTGATTCGCGCCTTGCTCTACATTATAGCTCAGTGCTTGGGGGCGTTATGCGGCTGCGCCTTAGTCAAGTCACTACAGAGAGATCGCTACAACCACTATGGCGGTGCCGCCAACCAGCTCGTCGACGGCTACAGCAAGGGCACCGGTCTCGCCGTCGAGATCGTCGGCACCTTCGTCCTTCTCTACACCGTCTTCTCCGCCACCGATCCCAAACGCAACGCCCGAGATTCCTACGTTCCTGTGCTGGCTCCACTCCCCATTGGGTTCACTGTTTTCATGGTTCATCTCGCTACAATTCCGATCACTGGCACTGGCATCAATCCAGCTCGAAGCTTCGGCGCCGCCGTGATCATCAACGATAAAGAAATTTGGAAAGATCATTGGATCTTCTGGGTCGGGCCGCTGATCGGAGCAACCATTGCTACGATGTATTACCAGGCAGTCGCGATTCCGTCGGAATCTTCCAGTTTCTTCGCACCCGGCAATCTCTATCTACAGGAGAATATGGCAACTAGGGGTCAAGGTGGTATCCAACAATTGCTTGCAGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGAAATGCAAAATTGGCCAGACTGAAACAAGCCAAAGAAGAGGCTGAAAAGGAAATTGCTGCTTACCGTGCCCAAGTGGAGGCTGAGTTCCAAAGAAAACTCTCTGAGAGTAGCGGAGATTCAGGAGCTAATGTTAAGCGGCTTGAAGTCGAGACAGATGCAAAGATTGCGCACCTGAAAGAAGAGTGTGCTAGAATTTCATACGATGTCGTGGACATGCTCCTGAAGCATGTGACAACCGTGAAAAATTGA | 1200 | 51.92 | MANNDIEVGSRGSLPRKDYFEPLPAPMIDMEELAKWSFYRAIIAEFVATLLFLYVVVLTVIGNKTQTDPIIGGNLCGGVGTLGIAWVFGGMIFVLVYCTAGISGGHINPAVTFGMFLGRKISLIRALLYIIAQCLGALCGCALVKSLQRDRYNHYGGAANQLVDGYSKGTGLAVEIVGTFVLLYTVFSATDPKRNARDSYVPVLAPLPIGFTVFMVHLATIPITGTGINPARSFGAAVIINDKEIWKDHWIFWVGPLIGATIATMYYQAVAIPSESSSFFAPGNLYLQENMATRGQGGIQQLLAAEQEAQHIVNAARNAKLARLKQAKEEAEKEIAAYRAQVEAEFQRKLSESSGDSGANVKRLEVETDAKIAHLKEECARISYDVVDMLLKHVTTVKN | 399 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1736779 | 1741766 | - | CmaCh06G003750.1 | Cma06g00375 | 295929 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00375 | 399 | ProSitePatterns | MIP family signature. | 106 | 114 | IPR022357 | - | |
Cma06g00375 | 399 | Gene3D | - | 289 | 399 | - | - | |
Cma06g00375 | 399 | Pfam | Major intrinsic protein | 33 | 267 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma06g00375 | 399 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 6 | 271 | IPR034294 | - | |
Cma06g00375 | 399 | TIGRFAM | V_ATP_synt_G: V-type ATPase, G subunit | 291 | 398 | IPR005124 | GO:0016471|GO:0046961|GO:1902600 | |
Cma06g00375 | 399 | PANTHER | AQUAPORIN PIP2-4-RELATED | 6 | 271 | - | - | |
Cma06g00375 | 399 | PRINTS | Major intrinsic protein family signature | 174 | 192 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma06g00375 | 399 | PRINTS | Major intrinsic protein family signature | 210 | 232 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma06g00375 | 399 | PRINTS | Major intrinsic protein family signature | 125 | 144 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma06g00375 | 399 | PRINTS | Major intrinsic protein family signature | 250 | 270 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma06g00375 | 399 | PRINTS | Major intrinsic protein family signature | 88 | 112 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma06g00375 | 399 | PRINTS | Major intrinsic protein family signature | 40 | 59 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma06g00375 | 399 | SUPERFAMILY | Aquaporin-like | 31 | 276 | IPR023271 | - | |
Cma06g00375 | 399 | Pfam | Vacuolar (H+)-ATPase G subunit | 296 | 398 | IPR005124 | GO:0016471|GO:0046961|GO:1902600 | |
Cma06g00375 | 399 | Gene3D | Glycerol uptake facilitator protein. | 25 | 279 | IPR023271 | - | |
Cma06g00375 | 399 | CDD | MIP | 40 | 268 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma06g00375 | 399 | Coils | Coil | 314 | 348 | - | - | |
Cma06g00375 | 399 | TIGRFAM | MIP: MIP family channel proteins | 44 | 267 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma06g00375 | Cma14g00208 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00375 | Cma-Chr6:1736779 | Cma03g01241 | Cma-Chr3:8206142 | 4.00E-144 | dispersed | |
Cma14g00208 | Cma-Chr14:895299 | Cma06g00375 | Cma-Chr6:1736779 | 1.52E-66 | wgd | |
Cma02g00891 | Cma-Chr2:5289215 | Cma06g00375 | Cma-Chr6:1736779 | 1.16E-142 | wgd | |
Cma20g00484 | Cma-Chr20:2339049 | Cma06g00375 | Cma-Chr6:1736779 | 2.02E-144 | wgd | |
Cma03g01240 | Cma-Chr3:8202908 | Cma06g00375 | Cma-Chr6:1736779 | 3.50E-149 | wgd | |
Cma06g00375 | Cma-Chr6:1736779 | Cma07g00926 | Cma-Chr7:4445014 | 8.60E-138 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00375 | K09872 | - | csv:101214142 | 470.314 |