Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00393 ATGTCACAAGATTCCGAAGAGATAAAGACGACTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCGTCTCTTCTGATCTTCCTCCTCCTCCTCCTCCTCTTGACCCGTTTATAACCAACAACCCATCAGCCCCAACAGCTAAACACACAGACCCTGAAGACCTCAGACCCAAAGAGGAGGCTCAAGACGGATTTGGCAGAGCCACAAACGGAGATATGGAGTCTACTAGTGGTTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAGCCTGAGGCTGTCACCGCCGTTGGGTTTGGGGAGCTCTTCAGATTCGCCGATGGGTTGGATTACGTTTTGATGGCAATTGGGTCGGTCGGAGCCCTTGTCCATGGTTGTTCTCTGCCTCTGTTTCTTCGATTCTTCGCCGATCTTGTTAACTCTTTTGGGTCTTACGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTATGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCCTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAATCCACAAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATCCAGTATTTTGATACCGAGGTGCGAACATCTGATGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACATTTGTTTCCGGATTCGTTGTGGGTTTCACTGCGGTGTGGCAATTGGCTTTAGTAACCCTTGCGGTGGTTCCTCTGATTGCTGTAATCGGCGGCATCTACACCACCACAATAGCGAAGCTCACTGCCAAGACCCAGGAGGCTCTTTCAGAAGCTGGAAATATTGTCGAACAGACAATAGTTCAAATTCGAGTTGTTTTTGCTTTCGTCGGCGAATCAAGAGCATTACAGAGGTACTCCGCCGCATTGAAGATTTCTCAAAGAATAGGTTACAAGAGTGGGTTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTCGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTTGTTAGACACCATGCCACCAATGGCGGTCTCGCCATTGCCACCATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCAAAGGCTAAAGTTGCAGCTGCTAAAATCTACCGTATAATCGACCATAAGCCCACTCTAAACCGCAACAACGAATCTGGTTTGGAATTAGAGTCAGTTTCAGGACTGGTTGAGCTAAAAAACGTAGATTTCTCATACCCATCAAGACCAGATGTAAGAATCCTCAACAATTTCTCCCTAACTGTCCCTGCCGGAAAGACTATAGCTCTGGTCGGTAGCAGTGGCTCCGGCAAGAGTACCGTCGTCTCCCTCATTGAAAGATTCTATGACCCCATGTCAGGTGAAGTTCTTCTAGATGGGCGTGACATAAAAACTTTGAAGCTAAGATGGTTAAGACAGCAAATAGGGCTGGTGAGCCAAGAACCAGCTCTTTTTGCCACCACCATCAAGGAAAACATTCTCTTGGGCAGACCTGATGCAGATCAAGTTGAGGTCGAGGAAGCTGCTCGAGTCGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACTCAGGTAGGGGAAAGAGGACTGCAGCTTTCTGGGGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTGAAGAACCCTGCGATCCTACTCTTAGATGAGGCGACGAGTGCATTGGACTCGGAGTCAGAAAAGCTTGTACAGGAGGCTCTGGATCGCTTCATGATTGGGCGGACCACTCTTGTTATTGCCCATCGTCTCTCTACCATTCAGAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATAGGTACACATGATGAGCTCATTGCTAAAGGAGAGAATGGTGTATATGCTAAGCTCATCCGAATGCAGGAGATGGCACATGAAACTGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCGGTGAGCTCCCCCATAATTGCACGGAATTCTTCCTATGGACGATCACCATATTCGCGTCGGTTATCTGACTTCTCCACATCCGACTTTAGCCTCTCTCTGGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTTGCCTTTAAGGAGCAGGCTAGTTCCTTTTGGCGTCTTGTGAAAATGAATTCTCCTGAATGGCTCTATGCATTACTTGGTTCTGTTGGCTCTGTTGTTTGTGGGTTTTTAAGCGCCTTCTTCGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTATAATCCAGACCATGCTTTCATGAGCAGAGAAATAATAAAGTACTGCTATCTACTAATCGGACTTTCATCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTTACAGCAGTACTGAAAAATGAAATGGCATGGTTTGACCAGGAAGAAAATGAGAGTGCCAAGATTGCTGCAAGGCTGGCCCTCGACGCGAACAACGTCAGATCAGCTATTGGAGATAGGATTTCTGTGATTGTACAGAACACTTCACTAATGCTAGTTGCATGCACTGCCGGATTTGTTTTGCAGTGGCGCCTCTCTCTTGTCCTTGTAGCCGTCTTCCCTGTGGTTGTTGCGGCCACTGTCTTACAGAAAATGTTCATGACCGGTTTTTCAGGAGACCTTGAAGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCCATTGCCAATGTAAGGACTGTCGCTGCATTCAACTCAGAGGAAAAGATTGTCAGACTTTTCTCAACCAACCTTGAGATCCCACTACGACGCTGCTTTTGGAAGGGGCAGATTGCCGGTAGTGGATTTGGCATTGCTCAGTTCTCTCTTTATGCTTCCTATGCTCTAGGTCTTTGGTATGCCTCATGGCTTGTGAAGCATGGCCTCTCCGACTTTTCGAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCAAATGGTGCAGCTGAAACACTAACCCTGGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCGTTCGGTCTTTGCACTTCTTGACCGCAAAACCGAAATTGAACCTGATGACCCAGATGCCACCCCAGTCCCAGATAAACTACGTGGAGAGGTTGAATTCAAACATGTTGACTTTTCCTATCCAACTCGGCCTGACATCCCTGTCTTCAGAGACCTAAGTTTGCGTGCCCGAGCAGGTAAGACGCTTGCTCTTGTTGGCCCTAGCGGGTGTGGCAAGAGTTCTGTTATTGCACTAGTCCAAAGATTCTATGAGCCATCATCAGGACGAGTTATGATTGATGGAAAGGACATTCGTAAGTTCAATCTCAAGTCCCTGAGAAAGCACATTGCTATGGTCCCACAGGAGCCATGCTTATTTGCTGCTTCCATACATGATAACATAGCTTATGGCCACGAATCAGCTACCGAGGCTGAGATCATAGAAGCTGCAACTTTGGCGAATGCTCATAAGTTCATTTCTGCATTGCCAGAAGGATATAAAACTTATGTTGGGGAGAGGGGAGTTCAACTATCTGGTGGACAGAAGCAAAGAATTGCAATTGCCCGTGCTCTGATTAGGAAGGCAGAGCTAATACTACTAGATGAGGCAACAAGTGCACTCGATGCTGAATCCGAGCGATCCGTTCAGGAGGCCCTAAACAGGGCCTGTTCAGGAAAAACAACAATCGTAGTCGCTCATCGACTATCAACTATCCGAAATGCACACGTCATTGCAGTAATCGACGATGGTAAGGTTGCAGAGCAGGGATCACACTCACATTTGTTGAAAAATTATCCAGATGGGTGTTATGCCCGGATGATACAATTACAAAGATTCACACATAGCCAAGTGATTGGCATGACTTCAGGTTCAACTTCCTCAGCAAAAACTAGAGAGGATGATGAGAAAGAGAGCTAG 4092 47.43 MSQDSEEIKTTEQWKWSEMQGLELVSSDLPPPPPPLDPFITNNPSAPTAKHTDPEDLRPKEEAQDGFGRATNGDMESTSGSKKENGGGTSGEKPEAVTAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLTAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSAALKISQRIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPMSGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIQKADLVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSVGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGIAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIHDNIAYGHESATEAEIIEAATLANAHKFISALPEGYKTYVGERGVQLSGGQKQRIAIARALIRKAELILLDEATSALDAESERSVQEALNRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSAKTREDDEKES 1363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1818620 1824807 - CmaCh06G003930.1 Cma06g00393 295947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00393 1363 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 117 1339 IPR039421 -
Cma06g00393 1363 SUPERFAMILY ABC transporter transmembrane region 105 419 IPR036640 GO:0005524|GO:0016021
Cma06g00393 1363 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 441 677 IPR003439 GO:0005524
Cma06g00393 1363 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 117 1339 - -
Cma06g00393 1363 MobiDBLite consensus disorder prediction 71 86 - -
Cma06g00393 1363 CDD ABC_6TM_Pgp_ABCB1_D1_like 117 404 - -
Cma06g00393 1363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1087 1335 IPR027417 -
Cma06g00393 1363 ProSitePatterns ABC transporters family signature. 580 594 IPR017871 GO:0005524
Cma06g00393 1363 Pfam ABC transporter 1115 1263 IPR003439 GO:0005524
Cma06g00393 1363 Pfam ABC transporter 459 608 IPR003439 GO:0005524
Cma06g00393 1363 MobiDBLite consensus disorder prediction 1 94 - -
Cma06g00393 1363 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 773 1060 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma06g00393 1363 Pfam ABC transporter transmembrane region 776 1043 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma06g00393 1363 Pfam ABC transporter transmembrane region 119 391 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma06g00393 1363 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1096 1332 IPR003439 GO:0005524
Cma06g00393 1363 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 118 406 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma06g00393 1363 SUPERFAMILY ABC transporter transmembrane region 760 1082 IPR036640 GO:0005524|GO:0016021
Cma06g00393 1363 MobiDBLite consensus disorder prediction 51 67 - -
Cma06g00393 1363 Gene3D ABC transporter type 1, transmembrane domain 752 1061 IPR036640 GO:0005524|GO:0016021
Cma06g00393 1363 Gene3D ABC transporter type 1, transmembrane domain 1062 1339 IPR036640 GO:0005524|GO:0016021
Cma06g00393 1363 Gene3D ABC transporter type 1, transmembrane domain 104 693 IPR036640 GO:0005524|GO:0016021
Cma06g00393 1363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 432 680 IPR027417 -
Cma06g00393 1363 CDD ABC_MTABC3_MDL1_MDL2 1096 1335 - -
Cma06g00393 1363 ProSitePatterns ABC transporters family signature. 1235 1249 IPR017871 GO:0005524
Cma06g00393 1363 CDD ABC_MTABC3_MDL1_MDL2 441 680 - -
Cma06g00393 1363 MobiDBLite consensus disorder prediction 27 41 - -
Cma06g00393 1363 SMART AAA_5 1123 1315 IPR003593 -
Cma06g00393 1363 SMART AAA_5 468 654 IPR003593 -
Cma06g00393 1363 CDD ABC_6TM_Pgp_ABCB1_D2_like 763 1078 - -
Cma06g00393 1363 Gene3D - 431 681 IPR027417 -
Cma06g00393 1363 Gene3D - 1085 1336 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00393 Cma-Chr6:1818620 Cma15g00277 Cma-Chr15:1315054 0 dispersed
Cma20g00963 Cma-Chr20:4876686 Cma06g00393 Cma-Chr6:1818620 5.53E-88 dispersed
Cma06g00393 Cma-Chr6:1818620 Cma14g00224 Cma-Chr14:971717 8.15E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00393 K05658 - csv:101220974 2415.19